The use of Loop-mediated Isothermal Amplification (LAMP) to detect the re-emerging Human African Trypanosomiasis (HAT) in the Luangwa and Zambezi valleys
- Boniface Namangala1Email author,
- Lottie Hachaambwa2,
- Kiichi Kajino3,
- Aaron S Mweene4,
- Kyouko Hayashida3,
- Martin Simuunza4,
- Humphrey Simukoko5,
- Kennedy Choongo5,
- Pamela Chansa2,
- Shabir Lakhi2,
- Ladslav Moonga1,
- Amos Chota1,
- Joseph Ndebe4,
- Mutale Nsakashalo-Senkwe6,
- Elizabeth Chizema6,
- Lackson Kasonka2 and
- Chihiro Sugimoto3
© Namangala et al.; licensee BioMed Central Ltd. 2012
Received: 26 September 2012
Accepted: 26 November 2012
Published: 4 December 2012
Loop-mediated isothermal amplification (LAMP) is a novel strategy which amplifies DNA with high sensitivity and rapidity under isothermal conditions. In the present study, the performance of the repetitive insertion mobile element (RIME)-LAMP and human serum resistance-associated gene (SRA)-LAMP assays were evaluated using clinical specimens obtained from four male patients from Luangwa and Zambezi valleys in Zambia and Zimbabwe, respectively.
The cases reported in this preliminary communication were all first diagnosed by microscopy, through passive surveillance, and confirmed by both RIME-LAMP and SRA-LAMP. A good correlation between microscopy and LAMP was observed and contributed to staging and successful treatment of patient. RIME-LAMP and SRA-LAMP complimented each other well in all the cases.
Both RIME-LAMP and SRA-LAMP were able to detect Trypanosoma brucei rhodesiense DNA in patient blood and CSF and hence confirmed HAT in the parasitaemic patients. Our study indicates that the LAMP technique is a potential tool for HAT diagnosis, staging and may be useful for making therapeutic decisions. However, no statistically significant conclusion may be drawn due to the limited sample size used in the present study. It is thus imperative to conduct a detailed study to further evaluate the potential of LAMP as a bedside diagnostic test for HAT.
KeywordsHAT RIME-LAMP SRA-LAMP Trypanosoma brucei rhodesiense Zambia Zimbabwe
Human African trypanosomiasis (HAT) or sleeping sickness is one of the neglected tropical diseases (NTDs) that mainly affect resource-poor countries in sub–Saharan Africa . HAT is caused by Trypanosoma brucei rhodesiense (East and Southern Africa) and Trypanosoma brucei gambiense (West and Central Africa). It is transmitted through the bite of an infected tsetse fly (Glossina species) during a blood meal, with several domestic and wild animals acting as reservoirs of infection in rhodesiense HAT [1–3]. The disease comprises an early stage, characterized by the presence of parasites in blood and lymph and a late stage, characterized by parasite invasion of the central nervous system (CNS). In HAT endemic regions, routine disease diagnosis depends on clinical history of the patient, symptoms and mainly visualization of parasites in body fluids by microscopy [1, 4]. However, HAT clinical symptoms are not pathognomonic and may be confused with those of other endemic febrile diseases. Although microscopy is associated with low sensitivity due to fluctuating parasitaemia in gambiense HAT patients, parasitological confirmation is relatively easier in rhodesiense HAT patients because bloodstream trypanosomes are numerous . Molecular techniques such as PCR have higher sensitivity and specificity for trypanosome detection [5, 6]. However, the cost implications and requirement for highly skilled manpower are obstacles to their wide application in clinical settings in sub-Saharan Africa. Consequently, diagnosis of HAT in endemic regions remains unsatisfactory.
Loop-mediated isothermal amplification (LAMP) is a novel strategy which amplifies DNA with high sensitivity and rapidity under isothermal conditions (60-65°C), producing large quantities of DNA within 30-60 minutes . This allows visual detection of amplicons by naked eyes or through measurement of turbidity or fluorescence [8–10]. LAMP has been successfully developed and applied in the detection of various pathogens including protozoan parasites such as trypanosomes and Babesia species [11–13]. Advances in the development of trypanosome-specific LAMP have been made through the identification of conserved sequences (used to design highly specific LAMP tests) such as (i) the repetitive insertion mobile element (RIME) within the sub-genus Trypanozoon and in particular (ii) the human serum resistance-associated (SRA) gene, which defines T. b. rhodesiense and therefore provides unequivocal identification of the parasite [5, 14, 15]. The RIME-LAMP and SRA-LAMP primers were previously designed by Njiru et al. [6, 15].
Summary of patient data for some hospital reported HAT cases from the Luangwa and Zambezi valleys during the period 2010 – 2012
Contracted HAT from
Chama, near Mbambanda Sanctuary, Zambia
Telecommunication Company Employee
Chama, near Mbambanda Sanctuary, Zambia
Mashonaland, Hurungwe Safari Area, Zimbabwe
Mashonaland, Hurungwe Safari Area, Zimbabwe
After clinical examination, patient blood and CSF samples were collected. The presence of trypanosomes was detected by microscopic examination of the buffy coat following centrifugation of blood and white blood cell (WBC) count in the case of CSF. The samples were then sent to the School of Veterinary Medicine, University of Zambia, for identification of trypanosome species by LAMP. About 200 μl of each sample (blood or CSF) was placed on a labeled FTA® Elute card (Whatman FTA® Elute Cards, Whatman, UK) for DNA extraction according to the manufacturer’s suggested protocol. The resultant DNA was stored at minus 30°C until use. A LAMP reaction of 25 μl was performed using a Loopamp DNA Amplification Kit (Eiken Chemical, Tochigi, Japan) and the extracted DNA as template, as described by Thekisoe et al. . We used primers recently described by Njiru et al. [6, 15] for the RIME-LAMP and SRA-LAMP, respectively. The reaction mixture was incubated at 64°C for 30 minutes in a heat block (Dry Thermounit DTU 1B, TAIEC Co., Saitama, Japan) and then at 95°C for 2 minutes to terminate the reaction. The LAMP products were visualized using a transilluminator (WD, H19, Good design award Co., Japan).
Summary of clinical data for the HAT patients admitted to the University Teaching Hospital, Lusaka during the period 2010 – 2012
Parasites in Blood
Parasites in CSF
Control of HAT heavily relies on accurate diagnosis and effective case management [1, 16]. In the present study, we evaluated the performance of LAMP against microscopy, using clinical specimens obtained from four patients from Luangwa and Zambezi valleys. LAMP was not only sensitive, but also very specific [6, 15] and confirmed the microscopic observation of the trypanosomes in patient blood and CSF. Four other HAT suspected cases from Chama that tested negative by microscopy also tested negative by LAMP (data not shown), demonstrating good concordance between the two methods. In agreement with Matovu et al. , RIME-LAMP and SRA-LAMP exhibited similar sensitivities to detect T. b. rhodesiense in the blood and CSF of HAT patients and complimented each other.
According to our preliminary results, LAMP confirmed the standard staging criteria (microscopy and WBC in CSF) [1, 18, 19], which led to successful treatment of all the patients. Accurate staging of HAT is critical for the therapeutic decisions as demonstrated in the present study. LAMP appears to be a potential tool for HAT staging and may thus prove to be a useful guide in making therapeutic decisions for HAT patients. However, in view of the fact that the presence of trypanosomes alone without any CSF alterations may be insufficient for second stage HAT diagnosis, HAT staging in this study also considered WBC count in the CSF. It is noteworthy, that detection of trypanosome DNA in CSF does not always signify active infection because of the potential for false positive cases resulting from dead parasites in the blood entering the CNS through the blood-brain-barrier or parasites that die in the CSF, in particular following drug therapy [18, 19].
The four rhodesiense HAT cases reported in the present study were all detected through passive surveillance. It is possible that these cases could represent several others that may be unreported considering that HAT affects the poorest among the poor remote rural communities where social amenities are either weak or non-existent. According to Odiit et al. , about 39% of rhodesiense HAT cases and 92% of the deaths it causes are unreported. Indeed, there are several unpublished sporadic HAT cases reported at local health centers, mainly in the tsetse infested Luangwa and Zambezi valleys linked to National Parks . Of note, in 2008 alone, between the months of March and July, about 12 cases were reported in Chama district along the borders of Zambia and Malawi. These cases were found amongst Zambia Wildlife Authority staff assigned to the then newly opened Mbambanda Zaro sanctuary . Thus, in agreement with Mwanakasale and Songolo , there is need to increase both active and passive surveillance of HAT as well as community sensitization, particularly in HAT old foci where the disease appears to be re-emerging.
We envisage that this study will stimulate research to investigate the routine use of sensitive, specific and user-friendly techniques such as LAMP in the detection of emerging and re-emerging infectious diseases in endemic regions. Detailed studies using a larger sample size for further evaluation of the LAMP technique for diagnosis and staging of HAT patients, in particular in studies on HAT treatment responses, are justifiable.
This study received ethical clearance for collection of human blood and cerebral spinal fluid from the Ministry of Health, Zambia, and from the Biomedical Research Ethics Committee, University of Zambia. Samples were collected after written informed consent was obtained from the participants in the presence of independent witnesses.
Humana African trypanosomiasis
Neglected tropical diseases
- T. b. rhodesiense:
Trypanosoma brucei rhodesiense
Polymerase chain reaction
Central nervous system
Loop-mediated isothermal amplification
Repetitive insertion mobile element
Human serum resistance-associated antigen
Cerebral spinal fluid
University teaching hospital.
This study was part of the main project entitled “Establishment of rapid diagnostic tools for Tuberculosis and Trypanosomiasis and screening of candidate compounds for Trypanosomiasis in Zambia”, supported by the Japanese International Cooperation Agency (JICA). It also received financial support from the Center for Zoonosis Research, Hokkaido University, Japan, through the fund under the project entitled “Surveillance studies of emerging and re-emerging zoonoses”.
- Brun R, Blum J, Chappuis F, Burri C: Human African Trypanosomiasis. Lancet. 2010, 375: 148-159. 10.1016/S0140-6736(09)60829-1.View ArticlePubMedGoogle Scholar
- Anderson NE, Mubanga J, Fevre EM, Picozzi K, Eisler MC, Thomas R, Welburn SC: Characterization of the wildlife reservoir community for human and animal trypanosomiasis in the Luangwa Valley, Zambia. PLoS Negl Trop Dis. 2011, 5: e1211-10.1371.PubMed CentralView ArticlePubMedGoogle Scholar
- Blum J, Schimid C, Burri C: Clinical aspects of 2541 patients with second stage human African trypanosomiasis. Acta Trop. 2006, 97: 55-64. 10.1016/j.actatropica.2005.08.001.View ArticlePubMedGoogle Scholar
- Chappuis F, Loutan L, Simarro P, Lejon V, Büscher P: Options for field diagnosis of human african trypanosomiasis. Clin Microbiol Rev. 2005, 18: 133-146. 10.1128/CMR.18.1.133-146.2005.PubMed CentralView ArticlePubMedGoogle Scholar
- Gibson W, Backhouse T, Griffiths A: The human serum resistance associated gene is ubiquitous and conserved in T.b.rhodesiense throughout East Africa. Infect Genet Evol. 2002, 1: 207-214. 10.1016/S1567-1348(02)00028-X.View ArticlePubMedGoogle Scholar
- Njiru ZK, Mikosza AS, Matovu E, Enyaru JC, Ouma JO, Kibona SN, Thompson RC, Ndung'u JM: African trypanosomiasis: sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA. Int J Parasitol. 2008, 38: 589-599. 10.1016/j.ijpara.2007.09.006.View ArticlePubMedGoogle Scholar
- Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T: Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28: E63-10.1093/nar/28.12.e63.PubMed CentralView ArticlePubMedGoogle Scholar
- Poon LL, Wong BW, Ma EH, Chan KH, Chow LM, Abeye-wickreme W, Tangpukdee N, Yuen KY, Guan Y, Looareesuwan S, Peiris JS: Sensitive and inexpensive molecular test for Falciparum malaria: detecting Plasmodium falciparumDNA directly from heat-treated blood by Loop-mediated isothermal amplification. Clin Chem. 2006, 52: 303-306.View ArticlePubMedGoogle Scholar
- Tomita N: Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc. 2008, 3: 877-882. 10.1038/nprot.2008.57.View ArticlePubMedGoogle Scholar
- Wastling SL, Picpzzi K, Kakembo AS, Welburn SC: LAMP for human African trypanosomiasis: a comparative study of detection formats. PLoS Negl Trop Dis. 2010, 4: e865-10.1371/journal.pntd.0000865.PubMed CentralView ArticlePubMedGoogle Scholar
- Thekisoe OM, Kuboki N, Nambota A, Fujisaki K, Sugimoto C, Igarashi I, Yasuda J, Inoue N: Species-specific loop-mediated isothermal amplification (LAMP) for diagnosis of trypanosomosis. Acta Trop. 2007, 102: 182-189. 10.1016/j.actatropica.2007.05.004.View ArticlePubMedGoogle Scholar
- Ikadai H, Tanaka H, Shibahara N, Matsuu A, Uechi M, Itoh N, Oshiro S, Kudo N, Igarashi I, Oyamada T: Molecular evidence of infections with Babesia gibsoni parasites in Japan and evaluation of the diagnostic potential of Loop-mediated isothermal amplification method. J Clin Micribiol. 2004, 42: 2465-2469. 10.1128/JCM.42.6.2465-2469.2004.View ArticleGoogle Scholar
- Laohasinnarong D, Thekisoe OM, Malele I, Namangala B, Ishii A, Goto Y, Kawazu SI, Sugimoto C, Inoue N: Prevalence of Trypanosoma sp. in cattle from Tanzania estimated by conventional PCR and loop-mediated isothermal amplification (LAMP). Parasitol Res. 2011, 109: 1735-1739. 10.1007/s00436-011-2513-2.View ArticlePubMedGoogle Scholar
- Xong HV, Vanhamme L, Chamekh M, Chimfwembe CE, Van Den Abbeele J, Pays A, Van Meirvenne N, Hammers R, De Baetselier P, Pays E: A VSG expression site-associated gene confers resistance to human serum in Trypanosoma rhodesiene. Cell. 1998, 95: 839-846. 10.1016/S0092-8674(00)81706-7.View ArticlePubMedGoogle Scholar
- Njiru ZK, Mikosza AS, Armstrong T, Enyaru JC, Ndung'u JM, Thompson AR: Loop-mediated isothermal amplification (LAMP) method for rapid detection of Trypanosoma brucei rhodesiense. PLoS Negl Trop Dis. 2008, 2: e147-10.1371/journal.pntd.0000147.PubMed CentralView ArticlePubMedGoogle Scholar
- Kennedy PG: The continuing problem of human African trypanosomiasis (sleeping sickness). Ann Neurol. 2008, 64: 116-126. 10.1002/ana.21429.View ArticlePubMedGoogle Scholar
- Matovu E, Kuepfer I, Boobo A, Kibona S, Burri C: Comparative detection of trypanosomal DNA by loop-mediated isothermal amplification and PCR from flinders technology associates cards spotted with patient blood. J Clin Microbiol. 2010, 48: 2087-2090. 10.1128/JCM.00101-10.PubMed CentralView ArticlePubMedGoogle Scholar
- Deborggraeve S, Lejon V, Ekangu RA, Ngoyi DM, Pyana PP, Ilunga M, Mulunda JP, Buscher P: Diagnostic accuracy of PCR in gambiense sleeping sickness diagnosis, staging and post-treatment follow-up: a 2-year longitudinal study. PLoS Negl Trop Dis. 2011, 5: e972-10.1371/journal.pntd.0000972.PubMed CentralView ArticlePubMedGoogle Scholar
- Jamonneau V, Solano P, Garcia A, Lejon V, Dje N, Miezan TW, N’Guessan P, Cuny G, Buscher P: Stage determination and therapeutic decision in human African trypanosomiasis: value of polymerase chain reaction and immunoglobulin M quantification on the cerebrospinal fluid of sleeping sickness patients in Cote d’Ivoire. Trop Med Int Health. 2003, 8: 589-594. 10.1046/j.1365-3156.2003.01079.x.View ArticlePubMedGoogle Scholar
- Odiit M, Coleman PG, Liu WC, Mc Dermontt JJ, Fevre EM, Welburn SC: Quantifying the level of under-detection of Trypanosoma brucei rhodesiense sleeping sickness cases. Trop Med Int Health. 2005, 10: 840-849. 10.1111/j.1365-3156.2005.01470.x.View ArticlePubMedGoogle Scholar
- Simarro PP, Cecchi G, Paone M, José R, Franco JR, Diarra A, Ruiz JA, Fèvre ME, Courtin F, Mattioli RC, Jannin JG: The Atlas of human African trypanosomiasis: a contribution to global mapping of neglected tropical diseases. Int J Health Geogr. 2010, 9: 57-10.1186/1476-072X-9-57.PubMed CentralView ArticlePubMedGoogle Scholar
- Zambia Wildlife Authority (ZAWA) report: Trypanosomiasis (Sleeping Sickness) infection among Bambanda-Zaro Sanctuary (BZS) staff. 2008Google Scholar
- Mwanakasale V, Songolo P: Disappearance of human African trypanosomiasis transmission foci in Zambia in the absence of tsetse fly and trypanosomiasis control program over a period of forty years. Trans Royal Soc Trop Med Hyg. 2011, 105: 167-172. 10.1016/j.trstmh.2010.12.002.View ArticleGoogle Scholar
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