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Table 1 Frequencies of three-locus types under the hypothesis of free recombination

From: Population-based analyses of Giardia duodenalis is consistent with the clonal assemblage structure

Host Human (n = 369) Livestock (n = 45)
Assemblage* Num Obs.% Exp.% Num Obs.% Exp.%
000 140 38 6 11 34 2
001 4 1 10 0 0 5
010 1 0 10 0 0 5
011 6 2 15 0 0 14
100 0 0 9 0 0 5
101 0 0 14 0 0 14
110 1 0 14 0 0 14
111 217 59 22 34 64 43
Host Cat (n = 17) Dog (n = 55)
Assemblage* Num Obs.% Exp.% Num Obs.% Exp.%
000 7 41 7 24 44 11
001 0 0 10 1 2 11
010 0 0 10 0 0 12
011 0 0 14 0 0 11
100 0 0 10 1 2 14
101 0 0 14 1 2 13
110 0 0 14 3 5 14
111 10 59 20 25 45 14
  1. * Letter 0 is a wildcard that designates either A (human, livestock, and cat assemblages) or C (dog). Similarly, letter 1 designates one of B (human), E (livestock), D (dog), or F (cat). Expected (Exp.) frequencies were calculated by multiplying the frequencies of genotype 0 at each locus with the frequencies of genotype 1 at each locus in eight possible ways. For comparison, the frequency of observed (Obs.) is displayed as well.