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Table 2 Primers and UPL used for genospecies identification of Borrelia burgdorferi s.l. in co-infected ticks using real time PCR assays

From: Occurrence and identification of risk areas of Ixodes ricinus-borne pathogens: a cost-effectiveness analysis in north-eastern Italy

Genospecies

Target gene

5'→ 3'primer sequence

UPL number

Amplicon

size (bp)c

B. burgdorferi s.s.

OspAa

TCTTGAAGGAACTTTAACTGCTGA

TGAAACTTCCCCAGATTTTGA

#119

97

B. afzelii

OspA

GACTCCGCAGGTACCAATTT

AAAGCGTTTTTAAGTTCATCAAGTG

#98

71

B. garinii

Flab

TCTGCTATGATTATGCCACCA CCTTTGCCTAAGAATTGATTACCA

#2

74

B. valaisiana

Fla

CCAAATGCACATGTTGTCAAA

TTTGCAGGTTGCATTCCA

#132

78

  1. aOspA: Outer surface protein A gene; bFla: flagellin gene; cbp: base pairs