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Table 3 Functional analysis on transcripts depending on their CpGo/e ratio

From: 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni

CpGo/e ratio

Over-represented GO terms

Under-represented GO terms

Housekeeping functions

Inducible functions

Non informative GO terms

Housekeeping functions

Inducible functions

Non informative GO terms

0-0.1

No enriched categories

No enriched categories

0.1-0.2

5

2

5

4

2

3

0.2-0.3

14

1

9

1

3

2

0.3-0.4

12

0

8

0

1

1

0.4-0.5

No enriched categories

No enriched categories

0.5-0.6

3

1

3

2

1

5

0.6-0.7

0

3

2

No enriched categories

0.7-0.8

1

8

2

14

1

13

0.8-0.9

0

0

2

7

1

6

0.9-1

0

1

3

2

0

3

>1

7

12

4

1

0

12

  1. Bg Gua cDNA (> = 500 pb) were divided into 11 cDNA subsets based on their CpGo/e ratio (Left column: 0-0.1 to >1). The cDNA set from each subcategory was independently tested for enrichment in functional categories (GO terms) against the complete Bg Gua transcriptome set. Over-represented or under-represented GO terms were classified in 3 subcategories: housekeeping GO, non informative GO, inductible GO (See Additional file 3 for assignment in these subcategories). The numbers represent the total number of GO terms that belong to one of these subcategories.