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Table 3 Functional analysis on transcripts depending on their CpGo/e ratio

From: 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni

CpGo/e ratio Over-represented GO terms Under-represented GO terms
Housekeeping functions Inducible functions Non informative GO terms Housekeeping functions Inducible functions Non informative GO terms
0-0.1 No enriched categories No enriched categories
0.1-0.2 5 2 5 4 2 3
0.2-0.3 14 1 9 1 3 2
0.3-0.4 12 0 8 0 1 1
0.4-0.5 No enriched categories No enriched categories
0.5-0.6 3 1 3 2 1 5
0.6-0.7 0 3 2 No enriched categories
0.7-0.8 1 8 2 14 1 13
0.8-0.9 0 0 2 7 1 6
0.9-1 0 1 3 2 0 3
>1 7 12 4 1 0 12
  1. Bg Gua cDNA (> = 500 pb) were divided into 11 cDNA subsets based on their CpGo/e ratio (Left column: 0-0.1 to >1). The cDNA set from each subcategory was independently tested for enrichment in functional categories (GO terms) against the complete Bg Gua transcriptome set. Over-represented or under-represented GO terms were classified in 3 subcategories: housekeeping GO, non informative GO, inductible GO (See Additional file 3 for assignment in these subcategories). The numbers represent the total number of GO terms that belong to one of these subcategories.