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Table 1 NCBI accession numbers (number.version) of GDP-L-fucose synthesis-associated genes referenced in this study

From: In silico analysis of the fucosylation-associated genome of the human blood fluke Schistosoma mansoni: cloning and characterization of the enzymes involved in GDP-L-fucose synthesis and Golgi import

Source organism

Gene identifier a

Nt accession

Prot. accession

Function b

References

Homo sapiens

GMDS

NM_001500.2

NP_001491.1

GMD

[36–39]

 

TSTA3/FX

NM_003313.3

NP_003304.1

GMER

[20, 37, 40, 41]

 

FUK

NM_145059.2

NP_659496.2

FUK

[14]

 

FPGT/GFPP

NM_003838.3

NP_003829.2

FPGT

[13, 42, 43]

Mus musculus

Gmds

NM_146041.2

NP_666153.1

GMD

[22]

 

Tsta3

NM_031201.1

NP_112478.1

GMER

[22, 44, 45]

 

Fuk

NM_172283.2

NP_758487.2

FUK

[15]

 

Fpgt

NM_029330.2

NP_083606.2

FPGT

" "

Danio rerio

gmds

NM_200489.2

NP_956783.2

GMD

[46, 47]

Drosophila melanogaster

Gmd

NM_135044.3

NP_608888.2

GMD

[11, 18]

 

Gmer

NM_137890.2

NP_611734.1

GMER

" "

Caenorhabditis elegans

gmd-1

AM231683.1

CAJ77752.1

GMD

[11]

 

gmd-2

NM_060705.1

NP_493106.1

" "

" "

 

ger-1

NM_066139.3

NP_498540.1

GMER

" "

Schistosoma mansoni

GMD

GU574757.1

ADO17520.1

GMD

Present study

 

GMER

GU574758.1

ADO17521.1

GMER

" "

Mortierella alpina

GMD

GU299800.1

ADC54120.1

GMD

[48]

 

GMER

GU299801.1

ADC54121.1

GMER

" "

Arabidopsis thaliana

GMD1

NM_126026.3

NP_201429.1

GMD

[11, 49]

 

MUR1/GMD2

NM_114976.3

NP_190685.2

" "

[11, 49, 50]

 

GER1

NM_105984.3

NP_177468.2

GMER

[11, 51, 52]

 

GER2

NM_101652.2

NP_564040.1

" "

[11]

 

FKGP

NM_100004.3

NP_563620.1

FUK/FPGT (dual)

[17]

Bacteroides fragilis

Gmd

CR626927.1

CAH07586.1

GMD

[16]

 

Fcl

CR626927.1

CAH07585.1

GMER

" "

 

Fkp

NC_003228.3

YP_212230.1

FUK/FPGT (dual)

[16, 53]

  1. a Official gene names/identifiers are provided. Genes in boldface type were used as query sequences to search for homologs in the SchistoDB [35].
  2. b GMD, GDP-D-mannose-4,6-dehydratase; GMER, GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; FUK, L-fucose kinase; FPGT, fucose-1-phosphate guanylyltransferase; FUK/FPGT, bifunctional L-fucose kinase/fucose-1-phosphate guanylyltransferase.