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Table 8 LongSAGE tags with >10-fold differential expression

From: The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis

Taga

Control

Infected

Difference

BmiGI match

Countb

Countb

(fold)

Description

Species

e-value

Upregulated with infection

       

TGATTGTGTGCTATGTG

1

148

148

Noc

   

GGGGCAAACACTATGGA

0

89

>89

No

   

AAGATCACACTGGCATT

1

59

59

No

   

TTTTCCCCAACCCAGGA

0

52

>52

BEACP61TR

Microplusin

R. microplus

7e-49

TTTTTCCCAACCCAGGA

1

41

41

No

   

GGTCAAGGGGTAATAAA

0

38

>38

No

   

GTGGTTACGGAGGCGGG

0

38

>38

No

   

CAGAAGCTTCAAAGCCA

1

35

35

No

   

TCGACAGGGTCATTCCG

0

32

>32

No

   

GCCGTTCTTAGTTGGTG

1

30

30

No

   

GCGGTTACGGAAGCGGG

0

27

>27

No

   

AAGATCACGCTGGCATT

0

25

>25

No

   

CACATCATAGAACAGCT

0

23

>23

No

   

ACAAATAAAATTGAGCT

0

23

>23

No

   

TACTGTACCGAGGCCAG

0

18

>18

No

   

GTTGTTACGGGTAACGG

0

18

>18

BEAE880TF

Secreted protein

I. scapularis

6e-20

ATATTGACATTTCGTAG

0

18

>18

TC12054

Mitochondrial DNA

R. sanguineus

0.0

CCGGTTCTTTCTTGGTG

0

15

>15

No

   

AAAAAGGCTCAAGAAAT

1

15

15

No

   

ATCTGAGTTTAGACCGA

25

354

14.2

TC5761

Mitochondrial DNA

R. sanguineus

0.0

GGTCAGTCGGTCCTTAG

1

14

14

TC12507

10kD secreted protein

A. monolakensis,

5e-28

GTAGCCGCCAGCCAAGG

2

23

11.5

No

   

CAGGCTGTCCCAGCAAT

4

45

11.2

BEAE009TR

Secreted salivary peptide

I. scapularis

1e-05

CTTACTGCCCCAGCAAT

2

21

10.5

TC8005

Secreted salivary peptide

I. scapularis

9e-15

Down-regulated with infection

       

TCTGGACGCGGCAAGGG

48

1

-48.0

No

   

CACGTACAACCTCTGCG

22

0

<-14.0

No

   

TTGTGCAGCGATCGGCA

22

1

-22.0

No

   

GTACCAGAGGACAAGCC

18

1

-18.0

No

   

TCGAACCCCCGGCAGTA

14

0

<-14.0

No

   

TGGGGCACGTCCAAGCT

14

1

-14.0

TC6102

Elongation factor beta

Ornithodoros parkeri,

1e-85

GTGGTGCCATCGGCGCT

14

1

-14.0

No

   

TCGAACCCCCGGCAGTA

12

1

-12.0

TC14104

Ribosomal protein S18

Ornithodoros parkeri,

1e-67

GAAGAAGCCATCGGCCG

12

1

-12.0

No

   

AACCCCGTCGAGCACCC

12

1

-12.0

TC12306

Ribosomal protein L8

Glossina morsitans morsitans

2e-116

GGCCGCTACCCGGACCT

12

1

-12.0

TC10648

Hypothetical protein

I. scapularis

1e-93

TGGTGCCCGAAACGAAG

68

6

-11.3

TC12322

Uro-adherence factor A

Taloromyces stipitatus

1e-05

AAGAGCGTGTGCGGCTG

36

3

-11.0

TC9377

Hypothetical protein

I. scapularis

1e-20

  1. a CATG trimmed from each tag’s 5′ end for clarity.
  2. b To allow comparisons, tag count data normalized to 8,750 total tag counts per library and individual counts adjusted accordingly. Thus, Control Library tags multiplied by 8750/6764 and Infected Library tags by 8750/8750.
  3. c Indicates no match to BmiGI
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