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Table 8 LongSAGE tags with >10-fold differential expression

From: The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis

Taga Control Infected Difference BmiGI match
Countb Countb (fold) Description Species e-value
Upregulated with infection        
TGATTGTGTGCTATGTG 1 148 148 Noc    
GGGGCAAACACTATGGA 0 89 >89 No    
AAGATCACACTGGCATT 1 59 59 No    
TTTTCCCCAACCCAGGA 0 52 >52 BEACP61TR Microplusin R. microplus 7e-49
TTTTTCCCAACCCAGGA 1 41 41 No    
GGTCAAGGGGTAATAAA 0 38 >38 No    
GTGGTTACGGAGGCGGG 0 38 >38 No    
CAGAAGCTTCAAAGCCA 1 35 35 No    
TCGACAGGGTCATTCCG 0 32 >32 No    
GCCGTTCTTAGTTGGTG 1 30 30 No    
GCGGTTACGGAAGCGGG 0 27 >27 No    
AAGATCACGCTGGCATT 0 25 >25 No    
CACATCATAGAACAGCT 0 23 >23 No    
ACAAATAAAATTGAGCT 0 23 >23 No    
TACTGTACCGAGGCCAG 0 18 >18 No    
GTTGTTACGGGTAACGG 0 18 >18 BEAE880TF Secreted protein I. scapularis 6e-20
ATATTGACATTTCGTAG 0 18 >18 TC12054 Mitochondrial DNA R. sanguineus 0.0
CCGGTTCTTTCTTGGTG 0 15 >15 No    
AAAAAGGCTCAAGAAAT 1 15 15 No    
ATCTGAGTTTAGACCGA 25 354 14.2 TC5761 Mitochondrial DNA R. sanguineus 0.0
GGTCAGTCGGTCCTTAG 1 14 14 TC12507 10kD secreted protein A. monolakensis, 5e-28
GTAGCCGCCAGCCAAGG 2 23 11.5 No    
CAGGCTGTCCCAGCAAT 4 45 11.2 BEAE009TR Secreted salivary peptide I. scapularis 1e-05
CTTACTGCCCCAGCAAT 2 21 10.5 TC8005 Secreted salivary peptide I. scapularis 9e-15
Down-regulated with infection        
TCTGGACGCGGCAAGGG 48 1 -48.0 No    
CACGTACAACCTCTGCG 22 0 <-14.0 No    
TTGTGCAGCGATCGGCA 22 1 -22.0 No    
GTACCAGAGGACAAGCC 18 1 -18.0 No    
TCGAACCCCCGGCAGTA 14 0 <-14.0 No    
TGGGGCACGTCCAAGCT 14 1 -14.0 TC6102 Elongation factor beta Ornithodoros parkeri, 1e-85
GTGGTGCCATCGGCGCT 14 1 -14.0 No    
TCGAACCCCCGGCAGTA 12 1 -12.0 TC14104 Ribosomal protein S18 Ornithodoros parkeri, 1e-67
GAAGAAGCCATCGGCCG 12 1 -12.0 No    
AACCCCGTCGAGCACCC 12 1 -12.0 TC12306 Ribosomal protein L8 Glossina morsitans morsitans 2e-116
GGCCGCTACCCGGACCT 12 1 -12.0 TC10648 Hypothetical protein I. scapularis 1e-93
TGGTGCCCGAAACGAAG 68 6 -11.3 TC12322 Uro-adherence factor A Taloromyces stipitatus 1e-05
AAGAGCGTGTGCGGCTG 36 3 -11.0 TC9377 Hypothetical protein I. scapularis 1e-20
  1. a CATG trimmed from each tag’s 5′ end for clarity.
  2. b To allow comparisons, tag count data normalized to 8,750 total tag counts per library and individual counts adjusted accordingly. Thus, Control Library tags multiplied by 8750/6764 and Infected Library tags by 8750/8750.
  3. c Indicates no match to BmiGI