Skip to main content

Table 1 Reference sequences of Orientia tsutsugamushi used in the phylogenetic analysis

From: Molecular epidemiology of Orientia tsutsugamushi in chiggers and ticks from domestic rodents in Shandong, northern China

Isolate Source Accession no. Country Year Length (bp)
Kato Human MM63382 Japan 1955 1590
Taiwan CDC Gilliam - DQ485289 Taiwan - 1860
Karp Human M33004 New Guinea 1943 1599
Kuroki Human M63380 Japan 1981 1599
Kawasaki Human M63383 Japan 1981 1569
TA678 Rattus rattus U19904 Thailand 1963 1548
TA763 R. rattus U80636 Thailand 1963 1581
TA686 Tupaia glis U80635 Thailand 1963 1599
TA716 Menetes berdmorei U19905 Thailand 1963 1575
Shimokoshi Human M63381 Japan 1980 1565
Boryong Human L04956 South Korea 1998 1602
HSB1 Rodent AF302983 Japan 1996-1997 1454
Yonchon Human U19903 South Korea 1989 1551
LX-1 Leptotrombidium spp. AF173042 Japan 1986 1445
Lc-1 L. chiangraiensis FJ374771 Thailand 2008 1590
LA-1 L. arenicola AF173049 Malaysia 1993 1432
LF-1 L. fletcheri AF173050 Malaysia 1993 1428
Fuji L. fuji AF201834 Japan 1998 1431
Sxh951 Human AF050669 China 1998 1544
Neimeng-65 Cricetulus barabansis DQ514319 China 2004-2005 1535
Shandong-XDM2 L. scutellare DQ514320 China 1996 1591
CHL Human JX202567 China 2011 658
ZQL Human JX202576 China 2011 657
ZZF Human KC456647 China 2011 655
STAD10-24 R. norvegicus JX202582 China 2010 656
STAD10-792 Mus musculus JX202583 China 2010 689
TAXT11-1023 M. musculus JX202584 China 2011 660
TAXT11-1103 M. musculus JX202585 China 2011 706
TADY11-1168 M. musculus JX202586 China 2011 676
TADY12-0305 R. norvegicus JX202587 China 2012 661
TADY12-0307 M. musculus JX202588 China 2012 660
YN11-24 C. barabansis KC456651 China 2011 667