Table 1 Reference sequences of Orientia tsutsugamushi used in the phylogenetic analysis
Isolate | Source | Accession no. | Country | Year | Length (bp) |
|---|---|---|---|---|---|
Kato | Human | MM63382 | Japan | 1955 | 1590 |
Taiwan CDC Gilliam | - | DQ485289 | Taiwan | - | 1860 |
Karp | Human | M33004 | New Guinea | 1943 | 1599 |
Kuroki | Human | M63380 | Japan | 1981 | 1599 |
Kawasaki | Human | M63383 | Japan | 1981 | 1569 |
TA678 | Rattus rattus | U19904 | Thailand | 1963 | 1548 |
TA763 | R. rattus | U80636 | Thailand | 1963 | 1581 |
TA686 | Tupaia glis | U80635 | Thailand | 1963 | 1599 |
TA716 | Menetes berdmorei | U19905 | Thailand | 1963 | 1575 |
Shimokoshi | Human | M63381 | Japan | 1980 | 1565 |
Boryong | Human | L04956 | South Korea | 1998 | 1602 |
HSB1 | Rodent | AF302983 | Japan | 1996-1997 | 1454 |
Yonchon | Human | U19903 | South Korea | 1989 | 1551 |
LX-1 | Leptotrombidium spp. | AF173042 | Japan | 1986 | 1445 |
Lc-1 | L. chiangraiensis | FJ374771 | Thailand | 2008 | 1590 |
LA-1 | L. arenicola | AF173049 | Malaysia | 1993 | 1432 |
LF-1 | L. fletcheri | AF173050 | Malaysia | 1993 | 1428 |
Fuji | L. fuji | AF201834 | Japan | 1998 | 1431 |
Sxh951 | Human | AF050669 | China | 1998 | 1544 |
Neimeng-65 | Cricetulus barabansis | DQ514319 | China | 2004-2005 | 1535 |
Shandong-XDM2 | L. scutellare | DQ514320 | China | 1996 | 1591 |
CHL | Human | JX202567 | China | 2011 | 658 |
ZQL | Human | JX202576 | China | 2011 | 657 |
ZZF | Human | KC456647 | China | 2011 | 655 |
STAD10-24 | R. norvegicus | JX202582 | China | 2010 | 656 |
STAD10-792 | Mus musculus | JX202583 | China | 2010 | 689 |
TAXT11-1023 | M. musculus | JX202584 | China | 2011 | 660 |
TAXT11-1103 | M. musculus | JX202585 | China | 2011 | 706 |
TADY11-1168 | M. musculus | JX202586 | China | 2011 | 676 |
TADY12-0305 | R. norvegicus | JX202587 | China | 2012 | 661 |
TADY12-0307 | M. musculus | JX202588 | China | 2012 | 660 |
YN11-24 | C. barabansis | KC456651 | China | 2011 | 667 |