The phylogeography of trypanosomes from South American alligatorids and African crocodilids is consistent with the geological history of South American river basins and the transoceanic dispersal of Crocodylus at the Miocene

Fermino, Bruno R; Viola, Laerte B; Paiva, Fernando; Garcia, Herakles A; de Paula, Catia D; Botero-Arias, Robinson; Takata, Carmen S A; Campaner, Marta; Hamilton, Patrick B; Camargo, Erney P; Teixeira, Marta MG

doi:10.1186/1756-3305-6-313

Table 1 Trypanosome isolates from South American and African crocodilians, host and geographic origin, and identification using sequences from SSU rRNA and gGAPDH genes

From: The phylogeography of trypanosomes from South American alligatorids and African crocodilids is consistent with the geological history of South American river basins and the transoceanic dispersal of Crocodylus at the Miocene

*Trypanosoma* Isolate	Host species	Geographic origin Locality/State/country	River Basin	Date	Sequence: GenBank acession numbers
*Trypanosoma* Isolate	Host species	Geographic origin Locality/State/country	River Basin	Date	SSU rRNA	gGAPDH
*T. terena* subclade
TCC^a 610	Caiman yacare	Miranda/MS/Brazil	PP	2002	EU5962522	EU596256
TCC 1611	Caiman yacare	Miranda/MS/ Brazil	PP	2005	KF546517	KF546503
BSC^b 28	Caiman crocodilus	Achaguas/Apure/Venezuela	OR	2005	KF546518	KF546504
BSC 50	Melanosuchus niger	Mamirauá/AM/ Brazil	AM	2010	KF546519
BSC 53	Melanosuchus niger	Mamirauá/AM/ Brazil	AM	2010	KF546520
BSC 27	Osteolaemus tetraspis	Quinara/Guinea Bissau		2012		KF546505
*T. ralphi* subclade
TCC 624	Caiman yacare	Miranda/MS/Brazil	PP	2002	EU596253	EU596257
TCC 625	Caiman yacare	Miranda/MS/Brazil	PP	2002	EU596259	KF546506
TCC 1092	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596254	EU596258
TCC 1100	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596260
TCC 1101	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596261	KF546507
TCC 1102	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596262	KF546508
TCC 1119	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596263	KF546509
TCC 1120	Caiman yacare	Miranda/MS/Brazil	PP	2005	EU596255	KF546510
TCC 1829	Caiman crocodilus	Lábrea/AM/Brazil	AM	2009	KF546521	KF546511
TCC1838	Melanosuchus niger	Lábrea/AM/Brazil	AM	2009	KF546527	KF546512
TCC 1974	Caiman yacare	Miranda/MS/Brazil	PP	2009	KF546522	KF546513
TCC 2218	Caiman crocodilus	Araguaína/TO/Brazil	AT	2011	KF546523	KF546514
BSC 29	Caiman yacare	Miranda/MS/Brazil	PP	2011		KF546515
BSC 51	Melanosuchus niger	Mamirauá/AM/Brazil	AM	2010	KF546524
BSC 56	Melanosuchus niger	Mamirauá/AM/Brazil	AM	2010	KF546525
BSC 64	Caiman crocodilus	Araguaína/TO/Brazil	AT	2011		KF546516
*T. grayi* subclade
BAN 1^c	Glossina palpalis tsetse fly	The Gambia		-	AJ620258	AJ620258
ANR 4 ^c	Glossina palpalis tsetse fly	The Gambia		-	AJ620257	AJ62025
CroCamp1^c	Crocodylus niloticus	Cameroon		-	KF546526	FM164795

a, TCC, Codes of cultures cryopreserved at the Trypanosomatid Culture Collection of the University of São Paulo; b, BSC, Blood Sample Collection; c, DNA samples. Samples analyses for the first time in this study are those obtained from 2005 to 2011; the Genbank accession numbers of DNA sequences determined in this study are KF546503-27.
Brazilian States: MS, Mato Grosso do Sul; AM, Amazonas; TO, Tocantins. River Basins: PP, Paraguay/Paraná; OR, Orinoco; AM, Amazon; AT, Araguaya/Tocantins.

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ISSN: 1756-3305

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