Origin | Strains | WHO code | Periphery/Region-Prefecture/Province (District) | Pathologya | MONb | K26 ampliconb | MLMT profilec | Structure K = 4d |
---|---|---|---|---|---|---|---|---|
TR(16) | EP3* | MHOM/TR/1994/EP3 | Aegean-Izmir | VL | n.d. | n.d. | 35 | pop2 |
EP16* | MCAN/TR/1996/EP16 | Aegean-Manisa | CanL | n.d. | n.d. | 36 | pop2 | |
EP43 | MCAN/TR/2000/EP43 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 37 | pop4 (sub4A) | |
EP44 | MCAN/TR/2000/EP44 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 37 | pop4 (sub4A) | |
EP49 | MCAN/TR/2000/EP49 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 37 | pop4 (sub4A) | |
EP50 | MCAN/TR/2000/EP50 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 38 | pop4 (sub4A) | |
EP53 | MCAN/TR/2000/EP53 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 39 | pop4 (sub4A) | |
EP55 | MCAN/TR/2000/EP55 | Aegean-Aydin(Kuşadası) | CanL | 98 | 870/940 | 40 | pop4 (sub4A) | |
EP56 | MCAN/TR/2000/EP56 | Marmara-Bilecik | CanL | 1 | 870/940 | 25 | pop2 | |
EP57 | MCAN/TR/2001/EP57 | Aegean-Muğla | CanL | n.d. | 870/940 | 25 | pop2 | |
EP58 | MCAN/TR/2001/EP58 | Aegean-Muğla | CanL | n.d. | 940 | 41 | pop2 | |
EP68 | MCAN/TR/2001/EP68 | Aegean-Aydin(Kuşadası) | CanL | n.d. | 940 | 41 | pop2 | |
EP88 | MCAN/TR/2003/EP88 | Black Sea-Çorum | CanL | 1 | 626 | 42 | pop3 (sub3B1) | |
EP89 | MHOM/TR/2003/EP89 | Aegean-Manisa(Alaşehir) | VL | n.d. | 870/940 | 43 | pop2 | |
EP126 | MCAN/TR/2005/EP126 | Aegean -Muğla(Bodrum) | CanL | 1 | 870/940 | 13 | pop2 | |
EP134 | MCAN/TR/2007/EP134 | Mediterranean-Hatay(Antakya) | CanL | 1 | 626 | 44 | pop4 (sub4C1) | |
CY(23) | CD1 | MCAN/CY/2001/CD1 | Limassol | CanL | 1 | 626 | 29 | pop1 (sub1A) |
CD13 | MCAN/CY/2003/CD13 | Limassol | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD21 | MCAN/CY/2004/CD21 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD22 | MCAN/CY/2004/CD22 | Limassol | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD34 | MCAN/CY/2005/CD34 | Limassol | CanL | 1 | 626 | 30 | pop1 (sub1B) | |
CD37 | MCAN/CY/2005/CD37 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD40 | MCAN/CY/2005/CD40 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD43 | MCAN/CY/2005/CD43 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD44 cl.5e | MCAN/CY/2005/CD44cl.5 | Paphos | CanL | 1 | 626 | 31 | pop1 (sub1B) | |
CD48 | MCAN/CY/2005/CD48 | Limassol | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD51 | MCAN/CY/2005/CD51 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD57 | MCAN/CY/2005/CD57 | Nicosia | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD62 | MCAN/CY/2005/CD62 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD68 | MCAN/CY/2005/CD68 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD74 | MCAN/CY/2006/CD74 | Famagusta | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD63 | MCAN/CY/2005/CD63 | Limassol | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD66 | MCAN/CY/2005/CD66 | Nicosia | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD85 | MCAN/CY/2006/CD85 | Nicosia | CanL | 1 | 626 | 32 | pop1 (sub1B) | |
CD87 | MCAN/CY/2006/CD87 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD88 | MCAN/CY/2006/CD88 | Paphos | CanL | 1 | 626 | 33 | pop1 (sub1B) | |
CD90 | MCAN/CY/2006/CD90 | Paphos | CanL | 1 | 626 | 29 | pop1 (sub1A) | |
CD91 | MCAN/CY/2006/CD91 | Paphos | CanL | 1 | 626 | 33 | pop1 (sub1B) | |
CD108 | MCAN/CY/2006/CD108 | Larnaca | CanL | 1 | 626 | 34 | pop1 (sub1B) | |
BG(1) | BG1 | MCAN/BG/2008/BG1 | Blagoevgrad | CanL | 1 | 940 | 11 | pop2 |
GR(54) | GH2* | MHOM/GR/2001/GH2 | Attica-Athens | VL | 1 | 870/940 | 1 | pop2 |
GH5* | MHOM/GR/2001/GH5 | Crete-Lasithi/Ag.Nikolaos | VL | 1 | 870/940 | 2 | pop2 | |
GH8* | MHOM/GR/2001/GH8 | Attica-Athens | VL | 1 | 870/940 | 3 | pop2 | |
GH9* | MHOM/GR/2001/GH9 | Attica-Athens | VL | 1 | 870/940 | 4 | pop4 (sub4C1) | |
GH10* | MHOM/GR/2001/GH10 | Attica-Athens | VL | 1 | 870/940 | 2 | pop2 | |
GH11* | MHOM/GR/2001/GH11 | Attica-Athens | VL | 1 | 870/940 | 3 | pop2 | |
GH13 | MHOM/GR/2003/GH13 | Crete-Heraklion | VL | 98 | 870/940 | 5 | pop4 (sub4A) | |
GH21 | MHOM/GR/2004/GH21 | Crete-Heraklion | VL | 1 | 870/940 | 6 | pop2 | |
GH22 | MHOM/GR/2004/GH22 | Crete-Rethymno | VL | 98 | 870/940 | 5 | pop4 (sub4A) | |
GH23 | MHOM/GR/2004/GH23 | Crete-Rethymno | VL | 98 | 870/940 | 7 | pop4 (sub4C1) | |
GH24 | MHOM/GR/2004/GH24 | Attica-Athens | VL | 1 | 626 | 8 | pop4 (sub4C2) | |
GH26 | MHOM/GR/2004/GH26 | Crete-Lasithi/Sitia | VL | 1 | 870/940 | 9 | pop2 | |
GH27 | MHOM/GR/2005/GH27 | Crete-Heraklion | VL | 1 | 940 | 10 | pop2 | |
LEM2289 | MHOM/GR/1990/LA1037 | Attica-Athens | VL | 1 | 870/940 | 11 | pop2 | |
PAPADO | MHOM/GR/1980/PAPADO | Attica-Athens | VL | 1 | 870/940 | 3 | pop2 | |
GH49 | MHOM/GR/2008/GH49 | North Aegean Sea-Lesbos/Mytilene | VL | 1 | 870/940 | 2 | pop2 | |
GH51 | MHOM/GR/2008/GH51 | Central Greece-Euboea/Halkida | VL | 1 | 940 | 12 | pop2 | |
GH54 | MHOM/GR/2009/GH54 | Central Greece-Phthiotis(Lamia) | VL | 1 | 870/940 | 13 | pop2 | |
GH55 | MHOM/GR/2009/GH55 | Crete-Heraklion | VL | 1 | 870/940 | 14 | pop2 | |
GH56 | MHOM/GR/2009/GH56 | Peloponnese-Arcadia (Tripoli) | VL | 1 | 870/940 | 15 | pop2 | |
GD3* | MCAN/GR/2001/GD3 | Crete-Heraklion | CanL | 98 | 870/940 | 16 | pop4 (sub4C1) | |
GD4* | MCAN/GR/2001/GD4 | Crete-Heraklion | CanL | 98 | 870/940 | 17 | pop4 (sub4C1) | |
GD9 | MCAN/GR/2002/GD9 | Crete-Heraklion | CanL | 1 | 870/940 | 18 | pop4 (sub4C2) | |
GD12 | MCAN/GR/2003/GD12 | Crete-Lasithi/Sitia | CanL | 1 | 870/940 | 2 | pop2 | |
GD14 | MCAN/GR/2003/GD14 | Crete-Heraklion | CanL | 98 | 870/940 | 3 | pop2 | |
GD17 | MCAN/GR/2004/GD17 | Crete-Heraklion | CanL | 98 | 870/940 | 5 | pop4 (sub4A) | |
GD18 | MCAN/GR/2004/GD18 | Crete-Heraklion | CanL | 1 | 626 | 19 | pop4 (sub4C2) | |
GD19 | MCAN/GR/2004/GD19 | Crete-Heraklion | CanL | 1 | 626 | 19 | pop4 (sub4C2) | |
GD20 | MCAN/GR/2004/GD20 | Crete-Heraklion | CanL | 1 | 870/940 | 11 | pop2 | |
GD23 | MCAN/GR/2004/GD23 | Crete-Lasithi/Sitia | CanL | 1 | 940 | 2 | pop2 | |
GD24 | MCAN/GR/2004/GD24 | Crete-Lasithi/Sitia | CanL | 1 | 870/940 | 2 | pop2 | |
GD25 | MCAN/GR/2004/GD25 | Crete-Lasithi/Sitia | CanL | 1 | 940 | 2 | pop2 | |
GD26 | MCAN/GR/2004/GD26 | Crete-Lasithi/Sitia | CanL | 1 | 870/940 | 2 | pop2 | |
GD31 | MCAN/GR/2005/GD31 | Crete-Lasithi/Sitia | CanL | 1 | 870/940 | 2 | pop2 | |
GD32 | MCAN/GR/2005/GD32 | Crete-Lasithi/Sitia | CanL | 1 | 940 | 2 | pop2 | |
GD33 | MCAN/GR/2005/GD33 | Crete-Lasithi/Sitia | CanL | 1 | 870/940 | 2 | pop2 | |
GD35 | MCAN/GR/2005/GD35 | Crete-Lasithi/Sitia | CanL | 98 | 870/940 | 5 | pop4 (sub4A) | |
GD36 | MCAN/GR/2005/GD36 | Crete-Lasithi/Sitia | CanL | 98 | 870/940 | 5 | pop4 (sub4A) | |
GD71 | MCAN/GR/2006/GD71 | Crete-Lasithi | CanL | 98 | 870/940 | 3 | pop2 | |
GD102 | MCAN/GR/2006/GD102 | Attica (Rafina) | CanL | 98 | 870/940 | 3 | pop2 | |
GD104 | MCAN/GR/2006/GD104 | Crete-Heraklion | CanL | 98 | 870/940 | 20 | pop4 (sub4A) | |
GD112 | MCAN/GR/2006/GD112 | Crete-Heraklion | CanL | 98 | 870/940 | 21 | pop4 (sub4A) | |
GD154 | MCAN/GR/2008/GD154 | Central Macedonia-Thessaloniki | CanL | 1 | 940 | 22 | pop2 | |
GD167 | MCAN/GR/2008/GD167 | Thessaly-Trikala | CanL | 98 | 870/940 | 11 | pop2 | |
GD192 | MCAN/GR/2008/GD192 | South Aegean-Dodecanese/Rhodes | CanL | 1 | 626/870/940 | 22 | pop2 | |
GD201 | MCAN/GR/2008/GD201 | East Macedonia-Drama | CanL | 1 | 870/940 | 23 | pop2 | |
GD204 | MCAN/GR/2009/GD204 | East Macedonia-Kavala | CanL | 1 | 870/940 | 24 | pop2 | |
GD210 | MCAN/GR/2009/GD210 | Epirus-Ioannina/Dodoni | CanL | 1 | 626 | 25 | pop2 | |
GD211 | MCAN/GR/2009/GD211 | Peloponnese-Argolis | CanL | 98 | 870/940 | 3 | pop2 | |
GD220 | MCAN/GR/2009/GD220 | West Greece-Achaea | CanL | 1 | 940 | 26 | pop2 | |
GD221 | MCAN/GR/2009/GD221 | Epirus-Arta | CanL | 1 | 626 | 25 | pop2 | |
GD223 | MCAN/GR/2009/GD223 | Ionian Islands-Corfu(Kerkyra) | CanL | 1 | 626/940 | 27 | pop4 (sub4C2) | |
GD229 | MCAN/GR/2009/GD229 | South Aegean-Cyclades | CanL | 1 | 940 | 13 | pop2 | |
GD237 | MCAN/GR/2010/GD237 | Central Macedonia-Imathia | CanL | 1 | 940 | 28 | pop2 | |
AL(5) | AH2 | MHOM/AL/2006/AH2 | unknown | VL | 1 | 870/940 | 52 | pop2 |
AH4 | MHOM/AL/2006/AH4 | unknown | VL | 1 | 870/940 | 11 | pop2 | |
LEM3962 | MHOM/AL/2000/516LEZH | Tirana | VL | 1 | 870/940 | 53 | pop4 (sub4B) | |
AD16 | MCAN/AL/2004/AD16 | unknown | CanL | 1 | n.d. | 54 | pop2 | |
LEM3894 | MCAN/AL/98/C78L574 | Tirana | CanL | 1 | 870/940 | 54 | pop2 | |
HR(10) | Lu | MCAN/HR/2009/Lu | Unknown | CanL | 1 | 626 | 45 | pop3 (sub3B2) |
Ne | MCAN/HR/2009/Ne | Cetina(Brač) | CanL | 1 | 626 | 46 | pop3 (sub3B2) | |
Me | MCAN/HR/2009/Me | Cetina(Makarska) | CanL | 1 | 626 | 47 | pop3 (sub3B2) | |
Mr | MCAN/HR/2008/Mr | unknown | CanL | 1 | 626 | 48 | pop4 (sub4B) | |
GS | MCAN/HR/2009/GS | unknown | CanL | 1 | 626 | 49 | pop4 (sub4B) | |
Ć | MCAN/HR/2009/Ć | unknown | CanL | 1 | 626 | 47 | pop3 (sub3B2) | |
U | MCAN/HR/2009/U | Dubrava(Korčula) | CanL | 1 | 626 | 48 | pop4 (sub4B) | |
Pa | MCAN/HR/2009/Pa | Dubrava(Korčula) | CanL | 1 | 626 | 50 | pop4 (sub4B) | |
SO | MCAN/HR/2011/SO | Dubrovnik | CanL | 1 | 626 | 45 | pop3 (sub3B2) | |
AL | MCAN/HR/2011/AL | Split | CanL | 1 | 626 | 51 | pop3 (sub3B1) | |
FR(3)R | LG1* | MHOM/FR/1996/LEM75 | Cévennes | VL | 1 | 626 | 69 | pop3 (sub3B1) |
LG2* | MHOM/FR/1995/LPN114 | Côte d’Azur | VL | 1 | 626 | 70 | pop3 (sub3B1) | |
LG4* | MHOM/FR/1997/LSL29 | Cévennes | CL | 1 | 626 | 71 | pop3 (sub3B1) | |
ES(11)R | LLM-1139* | MCAN/ES/2002/LLM-1139 | Ibiza | CanL | 1 | 626 | 55 | pop3 (sub3A) |
LLM-1228* | MCAN/ES/2003/LLM-1228 | Ibiza | CanL | 1 | 626 | 56 | pop3 (sub3A) | |
LLM-1241* | MCAN/ES/2003/LLM-1241 | Ibiza | CanL | 1 | 626 | 57 | pop3 (sub3A) | |
PMI* | MHOM/ES/1993/PM1 | Majorca | VL | 1 | 626 | 58 | pop3 (sub3A) | |
LLM-981* | MHOM/ES/2001/LLM-981 | Majorca | VL | 1 | 626 | 59 | pop3 (sub3A) | |
LLM-1008* | MCAN/ES/2001/LLM-1008 | Majorca | CanL | 1 | 626 | 60 | pop3 (sub3A) | |
LLM-1150* | MHOM/ES/2002/LLM-1150 | Majorca | CL(HIV+) | 1 | 626 | 61 | pop3 (sub3A) | |
LLM-1038* | MCAN/ES/2001/LLM-1038 | Majorca | CanL | 1 | 626 | 62 | pop3 (sub3B1) | |
LLM-1116* | MCAN/ES/2002/LLM-1116 | Madrid | CanL | 1 | 626 | 63 | pop3 (sub3B1) | |
LLM-1136* | MCAN/ES/2001/LLM-1136 | Madrid | CanL | 1 | 626 | 64 | pop3 (sub3B1) | |
LLM-1181* | MHOM/ES/2002/LLM-1181 | Madrid | VL(HIV+) | 1 | 626 | 65 | pop3 (sub3B1) | |
PT(5)R | IMT184* | MHOM/PT/1993/IMT184 | Lisbon | VL | 1 | 626 | 65 | pop3 (sub3B1) |
ΙΜΤ339* | MCAN/PT/2003/IMT339 | Lisbon | CanL | 1 | 626 | 66 | pop3 (sub3B1) | |
IMT205* | MCAN/PT/1995/IMT205 | Alentejo | CanL | 1 | 626 | 65 | pop3 (sub3B1) | |
IMT288* | MHOM/PT/2002/IMT288 | Alto Douro | VL | 1 | 626 | 67 | pop3 (sub3B1) | |
ΙΜΤ316* | MCAN/PT/2003/IMT316 | Lisbon | CanL | 1 | 626 | 68 | pop3 (sub3B1) |