Table 2 Nucleotide diversity and sequence variation in repeats
Repeats type | Repeats | N° of SS | π | N° sites compared* | Sequence lengths |
|---|---|---|---|---|---|
Clade I type 1 | A, C, E, G | 2 | 0.01 | 112 | 112 |
Clade I type 2 | D, B, F, H | 5 | 0.02 | 108 | 108 |
An. campestris type 1 | A, C, E, G | 4 | 0.02273 | 110 | 110 (G), 111 (A,C,E) |
An. campestris type 2 | D, B, F | 9 | 0.05 | 112 | 112 (F), 113 (D,B) |
An. vanderwulpi type 1 | A, E, H | 11 | 0.08 | 103 | 103 (E), 108 (H), 117 (A) |
An. vanderwulpi type 2 | C, D, G | 6 | 0.04 | 102 | 102 (D), 105 (G), 107 (C) |
An. vanderwulpi type 3 | B, F, I | 6 | 0.04 | 98 | 99 (B,F), 110 (I) |
Clade III type 1 | A, E, H | 17 | 0.11 | 107 | 107 (E), 113 (H), 116 (A) |
Clade III type 2 | C, D, G | 7 | 0.05 | 101 | 103 (D,G), 105 (C) |
Clade III type 3 | B, F, I | 7 | 0.05 | 98 | 99 (B), 101 (F), 113 (I) |
Clade IV type 1 | A, D, F | 5 | 0.04 | 93 | 97 (F), 98 (D), 116 (A) |
Clade IV type 2 | E, G | 16 | 0.14 | 114 | 114 (E), 119 (G) |