Strain/genetic variant | Nucleotide positions 5’ → 3’a | Quality of habitat/country | No. of isolates (reference no. of samples)/site of study | GenBank acc. number | Host/vector found in other studies (only 100% homology; nucleotide sequences deposited in GenBank) | ||||
---|---|---|---|---|---|---|---|---|---|
199 | 328 | 376 | 539 | ||||||
This study | I | G | A | G | G | natural/ Poland | 2 (6,153)/KNP | KF312352 | bank vole (Myodes glareolus, KC740432); dog (KF985242); elk (Alces alces, KC800983); roe deer (Capreolus capreolus, JQ965530); cotton rat (Sigmodon hispidus, JQ063025); rat (Rattus norvegicus, KC470064); reindeer (Rangifer tarandus, JX841254); hedgehog (Erinaceus europaeus, JN571163); I. ricinus (KF481930), I. trianguliceps (KF481934) |
6 (39, 54, 73, 85, 90, 283)/BNP | |||||||||
II | G | A | A | G | urban/Poland | 8 (29, 37, 38, 47, 62, 67, 71, 73)/Bielański Forest | KF312353 | dog (EF668225); cat (HM138366); I. ricinus (JX909354); D. reticulatus (KF381413) | |
III | T | A | A | G | 1 (57)/Bielański Forest | KF312351 | n. m.b | ||
IV | G | A | A | T | 1 (64)/Bielański Forest | KF312354 | n. m.b | ||
A. phagocytophilum strains pathogenic for human | G | A | G | G | Poland | KF111754 | |||
G | A | G | G | Slovenia | GU236658 | ||||
G | A | G | - | Italy | DQ029028 | ||||
G | A | G | G | USA | GU236664 | ||||
G | A | G | G | USA | NR_074113 |