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Table 4 Parasitic nematode transcript assemblies

From: Identification and characterization of alternative splicing in parasitic nematode transcriptomes

 

Ancylostoma caninum

Cooperia oncophora

Dictyocaulus viviparus

Necator americanus

Oesophagostomum dentatum

Onchocerca flexuosa

Ostertagia ostertagi

Teladorsagia circumcincta

Trichostrongylus colubriformis

Publication

[30]

[27]

[23]

[26]

[24]

[28]

[27]

[29]

[25]

Genome BioProject ID

PRJNA72585

PRJNA72571

PRJNA72587

PRJNA72135

PRJNA72579

PRJNA230512

PRJNA72577

PRJNA72569

PRJNA74537

Stages

Egg, L1, L2, iL3, aL3, male, female

Egg, L1, L2, iL3, aL3, L4, male, female

Egg, L1, iL3, L5, male, female

iL3, mixed sex adults

L2, iL3, L4, male, female

Mixed sex adults

Egg, L1, L2, iL3, L4, mixed sex adults

Mixed sex adults

Mixed sex adults

Clean reads

4,028,728

6,113,083

4,740,349

1,566,641

2,614,527

1,050,204

7,528,633

1,746,999

2,513,840

Normalized or full assembly

Normalized

Normalized

Normalized

Normalized

Full

Full

Normalized

Full

Full

Number of isotigs

53,978

74,506

50,581

21,320

36,795

22,728

67,599

31,065

37,640

Average isotig length

1,029 bp

763 bp

964 bp

866 bp

815 bp

820 bp

889 bp

989 bp

535 bp

Number of isogroups

35,422

42,785

29,960

16,233

23,061

15,828

37,189

21,780

31,546

Number of AS Isogroups

9,955 (28.10%)

14,180 (33.14%)

10,380 (34.65%)

3,354 (20.66%)

5, 589 (24.24%)

3,869 (24.44%)

11,840 (31.84%)

4,604 (21.14%)

3,686 (11.68%)

Average isotigs per AS isogroup

2.86

3.24

2.99

2.52

3.46

2.78

3.57

3.02

2.65

Number of unique translations

48,713

60,697

44,784

20,286

29,478

20,436

58,022

28,041

35,669

Number of unique InterPro domains

4,103

3,967

4,110

3,823

3,978

2,212

4,903

4,550

3,454

Number of Unique GO terms

1,234

1,211

1,259

1,183

1,239

809

1,428

1,301

1,081