From: Identification and characterization of alternative splicing in parasitic nematode transcriptomes
 | Ancylostoma caninum | Cooperia oncophora | Dictyocaulus viviparus | Necator americanus | Oesophagostomum dentatum | Onchocerca flexuosa | Ostertagia ostertagi | Teladorsagia circumcincta | Trichostrongylus colubriformis |
---|---|---|---|---|---|---|---|---|---|
Publication | [30] | [27] | [23] | [26] | [24] | [28] | [27] | [29] | [25] |
Genome BioProject ID | PRJNA72585 | PRJNA72571 | PRJNA72587 | PRJNA72135 | PRJNA72579 | PRJNA230512 | PRJNA72577 | PRJNA72569 | PRJNA74537 |
Stages | Egg, L1, L2, iL3, aL3, male, female | Egg, L1, L2, iL3, aL3, L4, male, female | Egg, L1, iL3, L5, male, female | iL3, mixed sex adults | L2, iL3, L4, male, female | Mixed sex adults | Egg, L1, L2, iL3, L4, mixed sex adults | Mixed sex adults | Mixed sex adults |
Clean reads | 4,028,728 | 6,113,083 | 4,740,349 | 1,566,641 | 2,614,527 | 1,050,204 | 7,528,633 | 1,746,999 | 2,513,840 |
Normalized or full assembly | Normalized | Normalized | Normalized | Normalized | Full | Full | Normalized | Full | Full |
Number of isotigs | 53,978 | 74,506 | 50,581 | 21,320 | 36,795 | 22,728 | 67,599 | 31,065 | 37,640 |
Average isotig length | 1,029Â bp | 763Â bp | 964Â bp | 866Â bp | 815Â bp | 820Â bp | 889Â bp | 989Â bp | 535Â bp |
Number of isogroups | 35,422 | 42,785 | 29,960 | 16,233 | 23,061 | 15,828 | 37,189 | 21,780 | 31,546 |
Number of AS Isogroups | 9,955 (28.10%) | 14,180 (33.14%) | 10,380 (34.65%) | 3,354 (20.66%) | 5, 589 (24.24%) | 3,869 (24.44%) | 11,840 (31.84%) | 4,604 (21.14%) | 3,686 (11.68%) |
Average isotigs per AS isogroup | 2.86 | 3.24 | 2.99 | 2.52 | 3.46 | 2.78 | 3.57 | 3.02 | 2.65 |
Number of unique translations | 48,713 | 60,697 | 44,784 | 20,286 | 29,478 | 20,436 | 58,022 | 28,041 | 35,669 |
Number of unique InterPro domains | 4,103 | 3,967 | 4,110 | 3,823 | 3,978 | 2,212 | 4,903 | 4,550 | 3,454 |
Number of Unique GO terms | 1,234 | 1,211 | 1,259 | 1,183 | 1,239 | 809 | 1,428 | 1,301 | 1,081 |