Table 5 Enrichment of InterPro protein domains among alternatively spliced isogroups
From: Identification and characterization of alternative splicing in parasitic nematode transcriptomes
InterPro protein domain | Number of species with domain | Total number of Isogroups containing domain | Percentage of isogroups with domain that are AS* | P value for enrichment** | |
|---|---|---|---|---|---|
IPR000504 | RNA recognition motif domain | 9 | 858 | 50.7% | 2.1E-06 |
IPR016197 | Chromo domain-like | 9 | 128 | 64.1% | 3.8E-05 |
IPR012677 | Nucleotide-binding, alpha-beta plait | 9 | 1037 | 48.7% | 4.2E-05 |
IPR006092 | Acyl-CoA dehydrogenase, N-terminal | 8 | 53 | 73.6% | 2.0E-04 |
IPR013786 | Acyl-CoA dehydrogenase/oxidase, N-terminal | 9 | 68 | 69.1% | 3.2E-04 |
IPR003593 | AAA + ATPase domain | 8 | 189 | 57.7% | 3.6E-04 |
IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | 8 | 43 | 74.4% | 6.6E-04 |
IPR006091 | Acyl-CoA oxidase/dehydrogenase, central domain | 9 | 70 | 67.1% | 7.6E-04 |
IPR009100 | Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain | 9 | 93 | 63.4% | 8.9E-04 |
IPR011993 | Pleckstrin homology-like domain | 9 | 474 | 50.4% | 1.7E-03 |
IPR014001 | Helicase, superfamily 1/2, ATP-binding domain | 9 | 317 | 52.1% | 3.7E-03 |
IPR023780 | Chromo domain | 9 | 79 | 63.3% | 3.6E-03 |
IPR000953 | Chromo domain/shadow | 9 | 85 | 62.4% | 3.7E-03 |
IPR015421 | Pyridoxal phosphate-dependent transferase, major region, subdomain 1 | 9 | 275 | 52.7% | 3.8E-03 |
IPR002194 | Chaperonin TCP-1, conserved site | 8 | 55 | 67.3% | 3.6E-03 |
IPR003954 | RNA recognition motif domain, eukaryote | 9 | 41 | 70.7% | 4.5E-03 |
IPR006020 | PTB/PI domain | 9 | 71 | 63.4% | 5.7E-03 |
IPR001650 | Helicase, C-terminal | 9 | 298 | 51.7% | 6.8E-03 |
IPR017998 | Chaperone tailless complex polypeptide 1 (TCP-1) | 9 | 66 | 63.6% | 7.6E-03 |
IPR011545 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | 9 | 275 | 52.0% | 7.3E-03 |
IPR002495 | Glycosyl transferase, family 8 | 7 | 11 | 90.9% | 7.2E-03 |