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Table 1 Primer sequences used for Blastocystis genotyping

From: Advantage of using colonic washouts for Blastocystis detection in colorectal cancer patients

Subtypes

STS primer sets

Product size (bp)

Sequences of forward ( F) and reverse ( R) primers (5′-3′)

Source of primer

GenBank accession no.

Reference

Clade in the SSU rRNA phylogenya

1

SB83

351

F GAAGGACTCTCTGACGATGA

Nand II

AF166086

Yoshikawa et al. [6]

I

   

R GTCCAAATGAAAGGCAGC

    

2

SB155

650

F ATCAGCCTACAATCTCCTC

B

AF166087

 

VII

   

R ATCGCCACTTCTCCAAT

    

3

SB227

526

F TAGGATTTGGTGTTTGGAGA R

HV93–13

AF166088

Yoshikawa et al. [7]

III

   

TTAGAAGTGAAGGAGATGGAAG

    

4

SB332

338

F GCATCCAGACTACTATCAACATT

HJ96AS-1

AF166091

 

VI

   

R CCATTTTCAGACAACCACTTA

    

5

SB340

704

F TGTTCTTGTGTCTTCTCAGCTC

HJ96–1

AY048752

Yoshikawa et al. [18]

II

   

R TTCTTTCACACTCCCGTCAT

    

6

SB336

317

F GTGGGTAGAGGAAGGAAAACA

SY94–3

AY048751

 

V

   

R AGAACAAGTCGATGAAGTGAGAT

    

7

SB337

487

F GTCTTTCCCTGTCTATTCTGCA

RN94–9

AY048750

 

IV

   

R AATTCGGTCTGCTTCTTCTG