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Table 2 Structural alignment of SjB6 with human α1-antitrypsin and known helminth serpins

From: Characterisation of a secretory serine protease inhibitor (SjB6) from Schistosoma japonicum

Serpin name Genbank accession number Source Reference RMS value (Å) No of atoms involved
α1-antitrypsin AY256958 Humans Bollen et al.[48] 1.30 288
SRP-3 AY525080 C. elegans Pak et al.[49] 1.29 235
CsSERPIN EF550965 C. sinensis Kang et al. 1.15 238
SerpinEmu CAD12372.2 E. multilocularis Merckelbach and Ruppel [50] 1.15 235
Hc-serpin ACP43576 H. contortus Yi et al.[51] 1.23 247
PwSERPIN EU014295 P. westermani Hwang et al.[52] 1.18 239
Sh serpin AAA19730 S. haematobium Blanton et al.[53] 1.52 221
Sj serpin AAK57435 S. japonicum Yan et al.[54] 1.49 216
Smpi56 CCD60349 S. mansoni Ghendler et al.[55] 1.16 240
Contrapsin CCD60352 S. mansoni Modha and Doenhoff [56] 1.16 240
Ts11-1 DQ864973 T. spiralis Nagano et al.[57] 1.22 248
Tv Serp Y12233 T. vitrinus MacLennan et al.[58] 1.20 296
Bm-spn-1 U04206 B. malayi Yenbutr and Scott [59] 1.14 305
Bm-spn-2 AF009825 B. malayi Zang et al.[60] 1.19 298