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Table 2 Structural alignment of SjB6 with human α1-antitrypsin and known helminth serpins

From: Characterisation of a secretory serine protease inhibitor (SjB6) from Schistosoma japonicum

Serpin name

Genbank accession number

Source

Reference

RMS value (Ã…)

No of atoms involved

α1-antitrypsin

AY256958

Humans

Bollen et al.[48]

1.30

288

SRP-3

AY525080

C. elegans

Pak et al.[49]

1.29

235

CsSERPIN

EF550965

C. sinensis

Kang et al.

1.15

238

SerpinEmu

CAD12372.2

E. multilocularis

Merckelbach and Ruppel [50]

1.15

235

Hc-serpin

ACP43576

H. contortus

Yi et al.[51]

1.23

247

PwSERPIN

EU014295

P. westermani

Hwang et al.[52]

1.18

239

Sh serpin

AAA19730

S. haematobium

Blanton et al.[53]

1.52

221

Sj serpin

AAK57435

S. japonicum

Yan et al.[54]

1.49

216

Smpi56

CCD60349

S. mansoni

Ghendler et al.[55]

1.16

240

Contrapsin

CCD60352

S. mansoni

Modha and Doenhoff [56]

1.16

240

Ts11-1

DQ864973

T. spiralis

Nagano et al.[57]

1.22

248

Tv Serp

Y12233

T. vitrinus

MacLennan et al.[58]

1.20

296

Bm-spn-1

U04206

B. malayi

Yenbutr and Scott [59]

1.14

305

Bm-spn-2

AF009825

B. malayi

Zang et al.[60]

1.19

298