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Table 1 Classification of hybrid category for individuals detected as significantly mixed in Hybridlab/BAPS analyses

From: Contemporary gene flow between wild An. gambiae s.s. and An. arabiensis

     bx3_A.a bx2_A.a bx1_A.a F1 F2 F3 bx1_A.g bx2_A.g bx3_A.g  
    Sim_max 0.92 0.92 0.84 0.58 0.64 0.64 0.36 0.26 0.18  
    Sim_min 0.89 0.81 0.66 0.41 0.41 0.41 0.16 0.09 0.09  
IGS & SINE Arab Gam Prob (pure)           
A.g 0.16 0.84 <0.001 0 0 0 0 0 0 1 1 1 bx1+
A.g 0.12 0.88 0.006 0 0 0 0 0 0 0 1 1 bx2+
A.g 0.18 0.82 <0.001 0 0 0 0 0 0 1 1 1 bx1+
A.g 0.16 0.84 <0.001 0 0 0 0 0 0 1 1 1 bx1+
A.g 0.15 0.85 <0.001 0 0 0 0 0 0 0 1 1 bx2+
A.g 0.19 0.81 <0.001 0 0 0 0 0 0 1 1 0 bx1or2
A.g 0.23 0.77 <0.001 0 0 0 0 0 0 1 1 0 bx1or2
A.g 0.14 0.86 0.001 0 0 0 0 0 0 0 1 1 bx2+
A.g 0.14 0.86 0.001 0 0 0 0 0 0 0 1 1 bx2+
A.g 0.16 0.84 <0.001 0 0 0 0 0 0 1 1 1 bx1+
Hybrid 0.81 0.19 <0.001 0 1 1 0 0 0 0 0 0 bx1or2
Hybrid 0.50 0.50 <0.001 0 0 0 1 1 1 0 0 0 F1+
Hybrid 0.23 0.77 <0.001 0 0 0 0 0 0 1 1 0 bx1or2
Hybrid 0.53 0.47 <0.001 0 0 0 1 1 1 0 0 0 F1+
Hybrid 0.15 0.85 0.004 0 0 0 0 0 0 0 1 1 bx2+
Hybrid 0.82 0.18 <0.001 0 1 1 0 0 0 0 0 0 bx1or2
Hybrid 0.07 0.93 0.058† 0 0 0 0 0 0 0 0 0 see text
Hybrid 0.22 0.78 <0.001 0 0 0 0 0 0 1 1 0 bx1or2
Hybrid 0.31 0.69 <0.001 0 0 0 0 0 0 1 0 0 bx1
Hybrid 0.81 0.19 <0.001 0 1 1 0 0 0 0 0 0 bx1or2
Hybrid 0.58 0.42 <0.001 0 0 0 1 1 1 0 0 0 F1+
  1. Header rows show the maximum and minimum proportions for each category of hybrid simulated, where e.g. bx3_A.a is a third backcross generation to An. arabiensis. X-diagnostic marker classification of each sample is shown in the far left column followed by the BAPS estimate of the proportion of each species present in the sample and associated probability that the sample is not mixed. A ‘1’ under any category indicates the sample could represent a member of the hybrid category based on simulations. The far right column is a summary of plausible hybrid categories for each sample, where e.g. bx1+ is a backcross of the first or subsequent generation.