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Table 2 Flavivirus positive pools

From: Molecular characterization of flaviviruses from field-collected mosquitoes in northwestern Italy, 2011–2012

Flavivirus strain ID

GenBank accession number

Detected virus

Pool size

Collection date

NS5 short PCR

NS5 long PCR

DNA PCR

Oc941-AL

KF882512

MMV

200

4 Aug

+

+

/

Oc942-AL

KF882513

MMV

186

4 Aug/AL

+

+

/

USU/m2080-NO

KF882514

USUV

3

15 Sept/NO

+

+

/

Aa564-TO

KF801589

AeFV

1

1 Aug/TO

+

+

/

Av569-VC

KF801590

ISF (DNA form)

11

1 Aug/VC

+

-

+

Oc599-AL

KF801593

MMV

200

8 Aug/AL

+

+

/

Aa607-CN

KF801591

AeFV

5

8 Aug/CN

+

+

/

Aa610-TO

KF801592

AeFV

3

8 Aug/TO

+

+

/

USU/m688-NO

KF801594

USUV

200

22 Aug/NO

+

+

/

USU/m689-NO

KF801595

USUV

111

22 Aug/NO

+

+

/

Oc694-VC

/

ISF (DNA form?)

158

22 Aug/VC

+

-

ND

USU/m699-NO

KF801596

USUV

203

22 Aug/NO

+

+

/

Av707-VC

/

ISF (DNA form)

10

22 Aug/VC

+

-

+

Og709-VC

/

ISF (DNA form)

10

22 Aug/VC

+

-

+

Av710-VC

KF801597

ISF (DNA form)

4

22 Aug/

+

-

+

Oc748-AL

KF801598

MMV

88

28 Aug/AL

+

+

/

Aa756-CN

KF801599

AeFV

2

29 Aug/CN

+

+

/

USU/m851-NO

KF801600

USUV

18

5 Sept/NO

+

+

/

Av852-NO

/

ISF (DNA form)

1

5 Sept/NO

+

-

+

Av1012-VC

/

ISF (DNA form?)

4

19 Sept/VC

+

-

ND

Av1014-VC

KF801601

ISF (DNA form)

6

19 Sept/VC

+

-

+

Aa1015-TO

/

ISF (DNA form?)

4

19 Sept/TO

+

-

ND

Aa1019-TO

/

AeFV

7

19 Sept/TO

+

ND

/

Av1020-TO

KF801602

ISF (DNA form)

1

19 Sept/TO

+

-

+

Aa1028-BI

KF801603

AeFV

2

19 Sept/BI

+

+

/

Av1106-TO

KF801604

ISF (DNA form)

3

26 Sept/TO

+

-

+

Aa1108-AL

KF801605

AeFV

2

26 Sept/AL

+

+

/

Aa1109-TO

KM206278

AeFV

6

26 Sept/TO

+

+

/

Aa1113-CN

/

AeFV

10

26 Sept/CN

+

ND

/

Av1116-CN

KF801606

ISF (DNA form)

1

26 Sept/CN

+

-

+

Av1228-VC

KF801607

ISF (DNA form)

4

3 Oct/VC

+

-

+

Av1232-NO

KF801608

ISF (DNA form)

1

3 Oct/NO

+

-

+

Aa1243-TO

KF801609

AeFV

4

5 Oct/TO

+

+

/

Aa1245-BI

KF801610

AeFV

4

5 Oct/BI

+

+

/

Aa1326-AL

KF801611

AeFV

5

10 Oct/AL

+

+

/

Aa1332-AL

KF801612

AeFV

2

10 Oct/AL

+

+

/

Av1337-NO

KF801613

ISF (DNA form)

3

12 Oct/NO

+

-

+

  1. The Flavivirus strain ID code refers to mosquito species (Oc: Oc. caspius, Aa: Ae. albopictus, Av: Ae. vexans, Og: Oc. geniculatus, Cp: Cx. pipiens), sample no.- province (TO, Torino; CN, Cuneo; NO, Novara; BI, Biella; VC, Vercelli; AL, Alessandria); for USUV ID: virus/organism (mosquito), sample no.-province. ND: not done for lack of material.