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Table 2 Characteristics of the selected APVs and the corresponding forward and reverse primers

From: A new multiple-locus variable-number tandem repeat analysis reveals different clusters for Anaplasma phagocytophilum circulating in domestic and wild ruminants

VNTR name

BU Length (bp)

Genome localization (HZ strain)

Gene

Primer Sequence 5′ - > 3′

Allele size range (bp)

Allele size range (BU)

Number of allele

APV-A

201

28845-29712

APH_0032

F TGTAAGCAAGCACCCAACGCGAA

130-865

0,5-4,5

6

    

R GCCAGAATCGCAACACACTGACG

   

APV-B

114

53792-54393

rpe

F GGGGGTATGACGAGTGTGGTAGCAA

0*-945

0*-9

10

    

R CCTTACTGCACACCGTACACGCAAA

   

APV-C

189

340359-340834

APH_0351

F CCTACGGGGTGTCTTGCGTCCTA

90-1400

0,5-7,5

10

    

R CTGCGCGAGTTTATGTGCAACT

   

APV-D

123

376959-377498

virB6-3

F ATAGTGTGCAAGGCGCTAGTAATG

355-750

3-6

5

    

R TGTCGGACTATGCTTTTCACCATT

   

APV-E

15

214596-214852

APH_0215

F CGACCTATGATCGCAGTGTA

5-925

0,5-62

14

    

R GTAGCAAGGTAACCACTACCA

   
  1. F: forward; R: reverse.
  2. * absence of VNTR.