Table 2 Molecular tools for T. asiatica identification

Nucleotide sequencing

mt-COX-1

–

McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]; Gasser et al. 1999 [88]; Wang & Bao 2003 [76]; Yamasaki et al. 2005 [89]; Jeon et al. 2008 [70]; Okamoto et al. 2010 [29]; Jeon et al. 2011a [87]; Jeon et al. 2011b [72]; Yang et al. 2012 [79]

28S rDNA

–

McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]

mt-NAD-1

–

Gasser et al. 1999 [88]

5.8S rDNA/ITS-2/28S rDNA

–

Eom et al. 2002 [57]; Jeon et al. 2008 [70]

mt-COB

–

Le et al. 2003 [90]; Yamasaki et al. 2005 [89]

HDP2

–

Gonzalez et al. 2010 [69]

ef1

–

Okamoto et al. 2010 [29]

elp

–

Okamoto et al. 2010 [29]

18 kDa/HP6

–

Gonzalez et al. 2011 [91]

mt-12S rDNA

–

Liu & Yang 2011 [77]

18S rDNA

–

Yan et al. 2013 [78]

PCR

Ribosomal DNA

–

Zarlenga et al. 1991 [13]; Zarlenga 1991 [14]; Morakote et al. 2000 [92]

HDP2

–

Gonzalez et al. 2004 [93]

HDP2

–

Gonzalez et al. 2010 [69]

PCR-RFLP

Ribosomal DNA

Bam HI

Zarlenga et al. 1991 [13]; Zarlenga 1991 [14]

mt-COX-1

Msp I

McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]

rDNA ITS-1

Msp I, Cfo I, Rsa I

McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]

Mitochondrial DNA

Eco RI, Hind III, Bg III, Xba I, Bam HI, Pvu II, Ava I, Hae III, Hinc II, Eco RV, Hpa II

Zarlenga & George 1995 [94]

HDP2

Bcl I or Bgl I

Gonzalez et al. 2004 [93]

12S rDNA

Dde I, Hinf I

Somers et al. 2007 [84]; Devleesschauwer et al. 2012 [65]

RAPD analysis

3 random primers: OPA-03, OPA-08, OPA-20

–

Eom et al. 2002 [57]

13 random primers: OPA-03, OPA-08, OPA-20, L-01, L-02, L-05, L-06, L-08, L-09, L-12, L-15, L-18, L-19

–

Zhang et al. 2006 [20]

BESS T-base analysis

mt-COX-1

–

Yamasaki et al. 2002 [66]

mt-COB

–

Yamasaki et al. 2002 [66]

Multiplex PCR

mt-COX-1

–

Yamasaki et al. 2004 [67]

HDP2

–

Gonzalez et al. 2004 [93]

mt-Valine tRNA, mt-NAD-2, mt-NAD-1

–

Jeon et al. 2009 [68]; Jeon et al. 2011a [87]

LAMP

mt-COX-1

–

Nkouawa et al. 2009 [28]; Nkouawa et al. 2012 [82]

cathepsin L-like cysteine peptidase [clp]

Hinf I

Nkouawa et al. 2009 [28]