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Table 2 Molecular tools for T. asiatica identification

From: Epidemiology and genetic diversity of Taenia asiatica: a systematic review

Method marker   Restriction enzymes References
Nucleotide sequencing
  mt-COX-1 McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]; Gasser et al. 1999 [88]; Wang & Bao 2003 [76]; Yamasaki et al. 2005 [89]; Jeon et al. 2008 [70]; Okamoto et al. 2010 [29]; Jeon et al. 2011a [87]; Jeon et al. 2011b [72]; Yang et al. 2012 [79]
  28S rDNA McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]
  mt-NAD-1 Gasser et al. 1999 [88]
  5.8S rDNA/ITS-2/28S rDNA Eom et al. 2002 [57]; Jeon et al. 2008 [70]
  mt-COB Le et al. 2003 [90]; Yamasaki et al. 2005 [89]
  HDP2 Gonzalez et al. 2010 [69]
  ef1 Okamoto et al. 2010 [29]
  elp Okamoto et al. 2010 [29]
  18 kDa/HP6 Gonzalez et al. 2011 [91]
  mt-12S rDNA Liu & Yang 2011 [77]
  18S rDNA Yan et al. 2013 [78]
PCR
  Ribosomal DNA Zarlenga et al. 1991 [13]; Zarlenga 1991 [14]; Morakote et al. 2000 [92]
  HDP2 Gonzalez et al. 2004 [93]
  HDP2 Gonzalez et al. 2010 [69]
PCR-RFLP
  Ribosomal DNA Bam HI Zarlenga et al. 1991 [13]; Zarlenga 1991 [14]
  mt-COX-1 Msp I McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]
  rDNA ITS-1 Msp I, Cfo I, Rsa I McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]
  Mitochondrial DNA Eco RI, Hind III, Bg III, Xba I, Bam HI, Pvu II, Ava I, Hae III, Hinc II, Eco RV, Hpa II Zarlenga & George 1995 [94]
  HDP2 Bcl I or Bgl I Gonzalez et al. 2004 [93]
  12S rDNA Dde I, Hinf I Somers et al. 2007 [84]; Devleesschauwer et al. 2012 [65]
RAPD analysis
  3 random primers: OPA-03, OPA-08, OPA-20 Eom et al. 2002 [57]
  13 random primers: OPA-03, OPA-08, OPA-20, L-01, L-02, L-05, L-06, L-08, L-09, L-12, L-15, L-18, L-19 Zhang et al. 2006 [20]
BESS T-base analysis
  mt-COX-1 Yamasaki et al. 2002 [66]
  mt-COB Yamasaki et al. 2002 [66]
Multiplex PCR
  mt-COX-1 Yamasaki et al. 2004 [67]
  HDP2 Gonzalez et al. 2004 [93]
  mt-Valine tRNA, mt-NAD-2, mt-NAD-1 Jeon et al. 2009 [68]; Jeon et al. 2011a [87]
LAMP    
  mt-COX-1 Nkouawa et al. 2009 [28]; Nkouawa et al. 2012 [82]
  cathepsin L-like cysteine peptidase [clp] Hinf I Nkouawa et al. 2009 [28]