Table 2 Molecular tools for T. asiatica identification
From: Epidemiology and genetic diversity of Taenia asiatica: a systematic review
| Method marker | Restriction enzymes | References | |
|---|---|---|---|
| Nucleotide sequencing | |||
| mt-COX-1 | – | McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17]; Gasser et al. 1999 [88]; Wang & Bao 2003 [76]; Yamasaki et al. 2005 [89]; Jeon et al. 2008 [70]; Okamoto et al. 2010 [29]; Jeon et al. 2011a [87]; Jeon et al. 2011b [72]; Yang et al. 2012 [79] | |
| 28S rDNA | – | McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17] | |
| mt-NAD-1 | – | Gasser et al. 1999 [88] | |
| 5.8S rDNA/ITS-2/28S rDNA | – | Eom et al. 2002 [57]; Jeon et al. 2008 [70] | |
| mt-COB | – | Le et al. 2003 [90]; Yamasaki et al. 2005 [89] | |
| HDP2 | – | Gonzalez et al. 2010 [69] | |
| ef1 | – | Okamoto et al. 2010 [29] | |
| elp | – | Okamoto et al. 2010 [29] | |
| 18 kDa/HP6 | – | Gonzalez et al. 2011 [91] | |
| mt-12S rDNA | – | Liu & Yang 2011 [77] | |
| 18S rDNA | – | Yan et al. 2013 [78] | |
| PCR | |||
| Ribosomal DNA | – | Zarlenga et al. 1991 [13]; Zarlenga 1991 [14]; Morakote et al. 2000 [92] | |
| HDP2 | – | Gonzalez et al. 2004 [93] | |
| HDP2 | – | Gonzalez et al. 2010 [69] | |
| PCR-RFLP | |||
| Ribosomal DNA | Bam HI | Zarlenga et al. 1991 [13]; Zarlenga 1991 [14] | |
| mt-COX-1 | Msp I | McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17] | |
| rDNA ITS-1 | Msp I, Cfo I, Rsa I | McManus & Bowles 1994 [15]; Bowles & McManus 1994 [16]; McManus 1997 [17] | |
| Mitochondrial DNA | Eco RI, Hind III, Bg III, Xba I, Bam HI, Pvu II, Ava I, Hae III, Hinc II, Eco RV, Hpa II | Zarlenga & George 1995 [94] | |
| HDP2 | Bcl I or Bgl I | Gonzalez et al. 2004 [93] | |
| 12S rDNA | Dde I, Hinf I | Somers et al. 2007 [84]; Devleesschauwer et al. 2012 [65] | |
| RAPD analysis | |||
| 3 random primers: OPA-03, OPA-08, OPA-20 | – | Eom et al. 2002 [57] | |
| 13 random primers: OPA-03, OPA-08, OPA-20, L-01, L-02, L-05, L-06, L-08, L-09, L-12, L-15, L-18, L-19 | – | Zhang et al. 2006 [20] | |
| BESS T-base analysis | |||
| mt-COX-1 | – | Yamasaki et al. 2002 [66] | |
| mt-COB | – | Yamasaki et al. 2002 [66] | |
| Multiplex PCR | |||
| mt-COX-1 | – | Yamasaki et al. 2004 [67] | |
| HDP2 | – | Gonzalez et al. 2004 [93] | |
| mt-Valine tRNA, mt-NAD-2, mt-NAD-1 | – | Jeon et al. 2009 [68]; Jeon et al. 2011a [87] | |
| LAMP | |||
| mt-COX-1 | – | Nkouawa et al. 2009 [28]; Nkouawa et al. 2012 [82] | |
| cathepsin L-like cysteine peptidase [clp] | Hinf I | Nkouawa et al. 2009 [28] | |