Table 2 Details of the isolated bacteria from biotic and abiotic compartments of Isfahan ZCL focus based on 16S rRNA sequences

Micrococcocaceae

8

[EzTaxon-e: AJ609630]

cheese; rhizosphere of wheat, tomato; endophyte of wheat, rice; air; soil; rabbit stool; mushroom compost; subsurface water from the China Sea

Arthrobacter bergerei

98.30%

[KF254744]

6

[EzTaxon-e: FQ311875]

Arthrobacter arilaitensis

99.22%

[KF254745]

3

[EzTaxon-e: X80739]

rhizosphere of wheat, tobacco; soil; air; lake; cold desert; dust; vermicompost; as plant growth-promoting rhizobacteria (PGPR)

Arthrobacter nicotianae

99.22%

[KF254746]

Microbacteriaceae

2

[EzTaxon-e: HQ219727] (T)

deep-sea sediment

Microbacterium sediminis

98.39%

[KF254679]

2

[EzTaxon-e: X77442]

vermicompost; endophyte of tobacco; air, plant roots

Microbacterium imperiale

99.93%

[KF254682]

2

[Greengenes: EU714342]

human clinical specimens; bovine rumen; raw milk; industrial effluent, rhizoplane of wheat, eucalyptus

Microbacterium paraoxydans

100%

[KF254680-81,683-729]

Streptomycetaceae

2

[EzTaxon-e: AB184327] (T)

rhizosphere of sugar beet, wheat, corn, soybean; soil

Streptomyces roseofulvus

100%

[KF254735]

Flavobacteriaceae

3,4

[EzTaxon-e: CM001437]

habitat-specific organisms; wet environments; bats; vermicompost; coastal water

Myroides odoratus

99.50%

[KF254739-43]

3

[Greengenes: FM162560]

soil; polluted sediment; clinical samples

Wautersiella falsenii

99.67%

[KF254733]

Bacillaceae

2

[EzTaxon-e: AM747813] (T)

arid soil; rhizosphere of elymus, carrot, maize, saffron, tea; endophyte of soybean

Brevibacterium frigoritolerans

100%

[KF254755]

2

[EzTaxon-e: AF295302]

endophyte of cotton, wheat; PGPR; salt lake; sediment; soil; coast; desert; root of glycine max, grapevine; Bemisia tabaci honeydew

Bacillus endophyticus

99.65%

[KF254667]

1,2

[EzTaxon-e: AB021185]

maize; seaweed, coral; mine; freshwater pond; fish gut; poultry waste; vermicompost

Bacillus flexus

100%

[KF254668-69]

2

[Greengenes: EF032672]

PGPR; saltmarsh sediment; Marine black sponge

Bacillus firmus

100%

[KF254670]

2

[EzTaxon-e: AY724690] (T)

milk powder; soil; hot spring water; as probiotic bacterium in aquaculture

Bacillus circulans

100%

[KF254671-72]

2,6,9

[Greengenes: FJ549019]

slaughterhouse waste; extremophile; a PGPR with antibacterial and antifungal activity; oil; soil; roots; milk powder

Bacillus pumilus

99.74%

[KF254673-76]

1

[EzTaxon-e: AJ831842] (T)

upper atmosphere; spring soil; rhizosphere of wheat,rice, nut, tobacco

Bacillus altitudinis

100%

[KF254585]

2,3,8

[Greengenes: GU568185]

larvicidal activity against culicidae; biocontrol activity against plant pathogens; great industrial application for production of enzymes, antibiotics, fermented foods and vitamins; Human, veterinary and aquaculture; probiotic; fermented soybean; Dioscorea zingiberensis; soil; hami-melon juice, slaughterhouse soil

Bacillus amyloliquefaciens

100%

[KF254566,71,77, JX661713]

2,6,7,9

[leBIBI: AB325584] (T)

Bacillus subtilis subsp spizizenii

100%

[KF254562,64,65,67,69]

11

[NCBI,16S: NR_027552] (T)

Bacillus subtilis subsp subtilis

99%

[KF254580]

8,9,11

[Greengenes: HM210636]

Bacillus subtilis

99.77%

[KF254563,68,70,82]

2

[NCBI,NC: HE993550]

Bacillus licheniformis

100%

[KF254572]

1,2

[NCBI,16S: NR_024696] (T)

Bacillus vallismortis

100%

[KF254573,74]

2,12

[Greengenes: FJ907189]

Bacillus mojavensis

100%

[KF254575,79,81]

3

[NCBI,NC: JQ917920]

Bacillus atrophaeus

100%

[KF254576]

3

[NCBI,NC: AB681416] (T)

Bacillus sonorensis

99%

[KF254578]

2

[NCBI,NC: JX290089]

insect to human pathogens

Bacillus cereus group

100%

[KF254677-78]

6

[NCBI,16S: NR_042072] (T)

soil; sediment; sspoiled coconut; vermicompost; gut of estuarine fish

Lysinibacillus fusiformis

99%

[KF254734]

2

[EzTaxon-e: FJ386524]

salt lake; a moderately halophilic bacterium

Terribacillus aidingensis

100%

[KF254730-31]

XII. Incertae Sedis

2

[Greengenes: AJ846291]

psychrophilie and alkaliphile; water; Anopheles stephensi

Exiguobacterium indicum

99.86%

[KF254737]

Paenibacillaceae

3

[Greengenes: AY359885]

blood culture, Phlebotomus papatasi; Apis melifera

Paenibacillus dendritiformis

98.34%

[KF254756]

12

[EzTaxon-e: EU014873] (T)

sugar cane

Saccharibacillus sacchari

97%

[KF254732]

Planococcaceae

9

[NCBI,NC: HM854242]

endophyte of Populus euphractica

Planomicrobium okeanokoites

99%

[KF254583]

2

[leBIBI: EU036220] (T)

glacier

Planomicrobium glaciei

99.86%

[KF254584]

10

[NCBI,NC: JX290556]

soy sauce

Sporosarcina luteola

99%

[KF254736]

Staphylococcaceae

3

[Greengenes: DQ361017]

commensal of the skin of humans and animals; meat fermentator, animal opportunistic infections, Musca domestica, Calliphora spp

Staphylococcus xylosus

100%

[JX661717]

1,2,10,12

[NCBI,NC: CP003194]

skin and respiratory tract of human, Phlebotomus argentipes

Staphylococcus aureus

100%

[KF254613,20, 26,34,38-57]

6

[Greengenes: HM113469]

human urinary tract infections, Phlebotomus papatasi, Phlebotomus argentipes, Musca domestica

Staphylococcus saprophyticus

100%

[KF254614-16,22]

2,4,8

[DDBJ: L37605]

animal and human skin/mucous; nosocomial pathogen associated with infections of implanted medical device

Staphylococcus epidermidis

100%

[KF254617,19,23,25,30,32,35,37]

3

[EzTaxon-e: AJ421446]

human; farm animals; pets; wild animals; food products of animal origin

Staphylococcus sciuri

100%

[KF254618,28]

2,6,8

[EzTaxon-e: AF004220]

cheese; sausages; skin of healthy wild animals; human clinical specimens; Dominican amber

Staphylococcus succinus

99.93%

[KF254621, 24, 29]

2

[Greengenes: L37601]

commensal on human and animal skin; human pathogens in immunocompromised patients

Staphylococcus hominis

99.86%

[KF254627]

2

[EzTaxon-e: L37603]

commensal on human and animal skin; human pathogens in immunocompromised patients

Staphylococcus warneri

100%

[KF254631]

2

[EzTaxon-e: EU888120]

viscera of common voles

Staphylococcus microti

100%

[KF254633]

Enterococcaceae

4,6,7,8,9,10,11

[Greengenes: FJ378679]

gastrointestinal tract colonizers with lifestyles ranging from intestinal symbiont to environmental persister to multidrug-resistant nosocomial pathogen

Enterococcus faecium

100%

[KF254533,34,36-41,43-50,56,57,60,61, JX661714]

1,3

[Greengenes: FJ607291]

Enterococcus faecalis

99.86%

[KF254542,51,54,55]

2,3

[Greengenes: FJ915740]

Enterococcus gallinarum

99.93%

[KF254535,52,53,59]

4

[NCBI,NC: AB680105]

Enterococcus casseliflavus

100%

[KF254558]

Brucellaceae

10

[EMBLE: FJ950543]

soil; oxytetracycline production wastewater

Ochrobactrum grignonense

99%

[KF254738]

Alcaligenaceae

2

[NCBI,NC: JN575638]

environment; pet birds; human opportunistic infections

Alcaligenes faecalis

99%

[KF254754]

Enterobacteriaceae

3

[EzTaxon-e: AJ233408]

soil, water; sewages; mammals; birds; reptiles; amphibians; biodegradator of tannic acid

Citrobacter freundii

99.93%

[KF254749]

2

[RDP: AF025369]

human clinical samples and food

Citrobacter murliniae

99.13%

[KF254750-52]

2,3

[Greengenes: FJ463820]

gut of humans and other warm-blooded animals

Escherichia coli

99.72%

[KF254747, 48]

2,3,5

[Greengenes: HM362787]

terrestrial and aquatic environments; as normal flora of plants; insects; humans

Enterobacter ludwigii

99.02%

[KF254586, 590,593,596,600,753]

3,6,10,11

[Greengenes: HM058581]

Enterobacter hormaechei

99.79%

[KF254587,88,94,97, JX661718]

3,6

[Greengenes: GU549440]

Enterobacter cloacae

100%

[KF254589,91,95]

3

[Greengenes: AY335554]

Enterobacter aerogenes

100%

[KF254592,601]

3

[NCBI,NC: JQ795788]

Enterobacter asburiae

100%

[KF254598]

6

[EzTaxon-e: Z96078]

Enterobacter cancerogenus

99.15%

[KF254599]

1

[NCBI,NC: Z96079] (T)

soil; candidate for 2,3-butanediol production; pathogen of maize and mulberry; endophyte of Populus euphratica; indigenous bacterium of zebrafish gut; PGPR of Tripterygium wilfordii’s; rhizosphere of symptomatic and asymptomatic plants of maize for Fusarium verticillioides; moderately halophilic bacterium from marine sediment; rhizosphere of rice and soybean; hutti gold mine water

E. cloacae dissolvens

99.93%

[KF254602]

3,4,5

[NCBI,16S: NR_041749] (T)

a zoonose agent; nosocomial infections

Klebsiella oxytoca

100%

[KF254664-66]

2

[EMBLE: AP012032]

PGRP of potato and pepper; epiphyte and entophyte of plants, is capable of infecting humans; occurs in diverse ecological niches

Pantoea ananatis

100%

[KF254658-61]

2

[NCBI,NC: JF799896]

part of the normal flora of the human gastrointestinal tract; when entering, causes urinary tract infections and the formation of stones; interkingdom swarming signals attract blow flies; melanoidin and heavy metals degrading bacterium; urine; fishmeal sample

Proteus mirabilis

100%

[KF254662,63]

Moraxellaceae

2,3

[DDBJ: JN644621]

soil, water; wastewater; as nosocomial pathogen; Effluent of treatment plant laden with hydrocarbons; PGPR; Mushroom compost

Acinetobacter calcoaceticus

100%

[KF254603-4,607,609,611]

2

[EzTaxon-e: ACQB01000091]

Acinetobacter baumannii

100%

[KF254608,10]

3

[NCBI,16S: NR_044454] (T)

soil; raw milk; wastewater; nosocomial pathogen; midgut of culex quinquefasciatus, mealybug; of ficus deltoidea Jack

Acinetobacter soli

100%

[KF254605,606,612]

Pseudomonadaceae

1,2

[EzTaxon-e: Z76651] (T)

human clinical speciments; rhizosphere of Nicotiana glauca; endophyte of black pepper; soil; coastline

Pseudomonas aeruginosa

99.93%

[KF254520-25,27-32, JX661716]

8

[EzTaxon-e: GQ161991] (T)

soil

Pseudomonas bauzanensis

99.72%

[KF254526]

Xanthomonadaceae

2,9

[EMBLE: GQ360071]

rhizosphere of common bean, Nicotiana glauca; human sputum

Stenotrophomonas maltophilia

99.72%

[KF254498,502,506,510,512,514-519]

1,2,9

[EzTaxon-e: AB021404]

PGPR; endophtic bacteria of invasive and stress resistant plants; chironomid egg masses; rhizosphere of rice, tobacco, maize; cow manure; endosymbionts of cotton leaf hopper and aphids; shrimp Penaeus merguiensis

Pseudomonas geniculata

100%

[KF254489-97,499-501,503-505,507-509,511,513, JX661715]