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Table 1 Codon usage in T. saginata and T. pisiformis

From: Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset

  

T. saginata

T. pisiformis

  

T. saginata

T. pisiformis

AA

Codon

N

RSCU

N

RSCU

AA

Codon

N

RSCU

N

RSCU

Phe

UUU

99671

0.97

33874

0.93

Ser

UCU

89398

1.11

26049

1.12

 

UUC

106107

1.03

39075

1.07

 

UCC

97503

1.21

27379

1.18

Leu

UUA

38856

0.45

12571

0.41

 

UCA

82438

1.02

23335

1

 

UUG

97522

1.13

33937

1.12

 

UCG

72259

0.9

21063

0.9

 

CUU

107259

1.24

39632

1.3

Pro

CCU

85183

1.1

25765

1.12

 

CUC

119595

1.38

41428

1.36

 

CCC

79819

1.03

23072

1.01

 

CUA

52511

0.61

17904

0.59

 

CCA

88760

1.14

26002

1.13

 

CUG

103594

1.2

36893

1.21

 

CCG

56540

0.73

16969

0.74

Ile

AUU

109448

1.3

41232

1.32

Thr

ACU

88533

1.13

29031

1.17

 

AUC

96607

1.15

36117

1.16

 

ACC

89404

1.14

27437

1.11

 

AUA

47039

0.56

16259

0.52

 

ACA

77048

0.98

23542

0.95

Met

AUG

113948

1

   

ACG

58709

0.75

18939

0.77

Val

GUU

95565

1.12

35811

1.19

Ala

GCU

122134

1.21

45524

1.3

 

GUC

85970

1

29881

0.99

 

GCC

111542

1.11

38284

1.09

 

GUA

45908

0.54

16165

0.54

 

GCA

95661

0.95

31761

0.91

 

GUG

115101

1.34

38575

1.28

 

GCG

73950

0.73

24715

0.7

Tyr

UAU

55514

0.81

21083

0.81

Cys

UGU

55868

0.99

17870

0.96

 

UAC

81868

1.19

30723

1.19

 

UGC

57522

1.01

19338

1.04

His

CAU

62791

0.95

21227

0.97

Arg

CGU

74482

1.33

26854

1.42

 

CAC

68855

1.05

22602

1.03

 

CGC

67662

1.2

24579

1.3

Gln

CAA

102281

0.96

32614

0.92

 

CGA

67187

1.2

22254

1.18

 

CAG

110043

1.04

38283

1.08

 

CGG

41070

0.73

13883

0.74

Asn

AAU

111522

1.07

38069

1.05

Ser

AGU

76215

0.94

21586

0.93

 

AAC

97493

0.93

34636

0.95

 

AGC

66542

0.82

20367

0.87

Lys

AAA

115265

0.92

41472

0.88

Arg

AGA

44857

0.8

13883

0.74

 

AAG

135856

1.08

52821

1.12

 

AGG

41815

0.74

13184

0.7

Asp

GAU

147181

1.1

54522

1.1

Gly

GGU

108511

1.38

36512

1.36

 

GAC

120957

0.9

44541

0.9

 

GGC

86502

1.1

30139

1.12

Glu

GAA

152714

0.91

56449

0.93

 

GGA

76898

0.98

27580

1.03

 

GAG

181548

1.09

65410

1.07

 

GGG

41741

0.53

13277

0.49

  1. N: the number of codons; RSCU: Relative synonymous codon usage. The frequently used codons are displayed in bold.