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Table 2 List of known miRNAs expressed and regulated across mosquito developmental stages

From: Dynamic expression of miRNAs across immature and adult stages of the malaria mosquito Anopheles stephensi

S. No.

miRNA

Length

Sequence

Tags Per Million (TPM)

    

LM

LF

PM

PF

AM

AF

1

ast-bantam-3p

22

TGAGATCACTTTGAAAGCTGAT

2199.4

245.4

5410.0

6599.4

9907.7

25521.7

2

ast-bantam-5p

23

CCGGTTTTCATTTTCGATCTGAC

3.3

 

5.9

7.5

24.0

43.4

3

ast-let-7

21

TGAGGTAGTTGGTTGTATAGT

65.8

5.1

384.4

538.1

983.3

1301.1

4

ast-miR-100

22

AACCCGTAGATCCGAACTTGTG

254.1

30.9

2226.8

2173.4

3732.3

8010.1

5

ast-miR-1000

21

ATATTGTCCTGTCACAGCAGT

8.1

0.6

14.1

19.8

45.6

54.0

6

ast-miR-10-3p

23

CAAATTCGGTTCTAGAGAGGTTT

21.7

7.1

41.1

60.8

67.8

102.0

7

ast-miR-10-5p

22

ACCCTGTAGATCCGAATTTGTT

614.5

151.3

2437.9

3984.4

25072.2

9310.7

8

ast-miR-11

22

CATCACAGTCTGAGTTCTTGCT

218.1

23.8

370.2

574.2

626.4

1269.3

9

ast-miR-1174

22

TCAGATCTACTTCATACCCATG

18.0

2.0

7.9

7.4

6.9

20.6

10

ast-miR-1175-3p

21

TGAGATTCTACTTCTCCGACT

41.6

4.0

50.8

65.1

81.6

66.8

11

ast-miR-1175-5p

22

AAGTGGAGTAGTGGTCTCATCG

9.2

 

3.2

4.9

3.4

4.2

12

ast-miR-12

23

TGAGTATTACATCAGGTACTGGT

107.4

12.8

128.2

109.3

373.3

438.8

13

ast-miR-124

20

TAAGGCACGCGGTGAATGCC

1.5

0.3

7.2

9.7

40.1

45.1

14

ast-miR-125-3p

21

ACAAGTTTTGATCTCCGGTAT

1.1

0.3

3.6

4.9

3.5

11.0

15

ast-miR-125-5p

22

TCCCTGAGACCCTAACTTGTGA

10.3

1.1

66.7

80.3

228.9

194.0

16

ast-miR-133-3p

22

TTGGTCCCCTTCAACCAGCTGT

9.2

0.3

30.4

42.8

138.3

129.4

17

ast-miR-133-5p

20

AGCTGGTTGACATCGGGTCA

   

0.2

0.1

 

18

ast-miR-137

22

TATTGCTTGAGAATACACGTAG

1.8

 

5.8

6.4

19.0

39.6

19

ast-miR-13a

22

CTCCTCAAAGGGTTGTGAAATG

0.4

 

0.4

0.6

1.3

1.3

20

ast-miR-13b-3p

23

TATCACAGCCATTTTGACGAGTT

44.1

9.6

135.1

190.7

138.4

124.9

21

ast-miR-13b-5p

22

TCGTAAAAATGGTTGTGCTGTG

3.7

2.3

6.9

14.3

5.5

18.6

22

ast-miR-1-3p

22

TGGAATGTAAAGAAGTATGGAG

19.5

2.8

243.3

259.6

428.2

197.9

23

ast-miR-14

22

TCAGTCTTTTTCTCTCTCCTAT

89.0

13.6

551.5

690.8

1779.2

4857.7

24

ast-miR-1-5p

18

TACTTCTTTACATTCCAT

  

0.2

0.4

0.2

 

25

ast-miR-184a

22

TGGACGGAGAACTGATAAGGGC

1360.2

161.5

4415.3

4174.1

13173.6

16430.4

26

ast-miR-184b

22

TGGACGGAGAACTGATAAAGGA

22.8

 

12.0

151.6

76.9

115.5

27

ast-miR-1889

20

CACATTACAGATTGGGATTA

  

0.1

0.2

1.1

0.9

28

ast-mir-1890

20

TGAAATCTTTGATTAGGTCT

7.7

1.7

126.0

133.4

34.3

38.7

29

ast-miR-1891

22

TGAGGAGTTAATTTGCGTGTTT

  

0.1

0.3

129.2

85.4

30

ast-miR-190-3p

22

CCCAGGAATCAAACATATTATT

  

0.5

2.8

13.1

23.4

31

ast-miR-190-5p

24

AGATATGTTTGATATTCTTGGTTG

9.2

4.5

23.0

30.5

57.7

56.8

32

ast-miR-193

20

TACTGGCCTACTAAGTCCCA

0.7

 

8.4

15.9

0.3

1.1

33

ast-miR-210-3p

21

CTTGTGCGTGTGACAACGGCT

4.0

0.6

6.0

7.5

107.6

291.1

34

ast-miR-210-5p

21

AGCTGCTGACCACTGCACAAG

  

0.1

 

0.2

0.5

35

ast-miR-219

20

TGATTGTCCAAACGCAATTC

  

0.2

0.7

2.4

0.4

36

ast-miR-252-3p

21

CTGCTGCCCAAGTGCTTATCG

0.4

 

0.5

0.7

3.0

4.4

37

ast-miR-252-5p

22

CTAAGTACTAGTGCCGCAGGAG

60.7

5.7

128.4

166.9

950.6

1111.8

38

ast-mir-263a

22

AATGGCACTGGAAGAATTCACG

2272.9

575.0

831.3

887.0

1205.4

3564.4

39

ast-miR-263b-3p

21

TGGATCTTTTCGTGCCATCGT

    

0.1

 

40

ast-miR-263b-5p

23

CTTGGCACTGGGAGAATTCACAG

5.5

2.3

17.3

25.8

133.4

137.4

41

ast-miR-275

22

TCAGGTACCTGAAGTAGCGCGC

135.0

11.9

286.9

451.9

341.0

711.3

42

ast-miR-276-3p

22

TAGGAACTTCATACCGTGCTCT

1118.3

136.9

2720.4

3464.7

3892.3

4702.5

43

ast-miR-2765

22

TGGTAACTCCACCACCGTTGGC

157.0

21.5

956.6

858.5

2.1

0.5

44

ast-miR-276-5p

22

AGCGAGGTATAGAGTTCCTACG

12.9

2.6

29.6

39.5

31.2

29.2

45

ast-miR-277

22

TAAATGCACTATCTGGTACGAC

36.8

6.0

605.0

657.4

3277.0

5776.7

46

ast-miR-278

21

TCGGTGGGACTTTCGTCCGTT

15.1

2.6

12.7

22.9

25.6

24.3

47

ast-miR-279

20

TGACTAGATCCACACTCATT

44.1

5.7

174.4

264.0

172.4

176.1

48

ast-miR-2796-3p

20

GTAGGCCGGCGGAAACTACT

2.6

0.6

3.2

4.3

20.1

25.7

49

ast-miR-2796-5p

22

AGGGGTTTCTTTCGGCCTCCAG

  

0.1

0.1

0.1

0.2

50

ast-mir-281-3p

22

TGTCATGGAATTGCTCTCTTTA

36.0

4.0

31.3

38.1

74.2

29.0

51

ast-miR-281-5p

22

AAGAGAGCTATCCGTCGACAGT

3986.2

233.8

4066.0

3725.7

14959.7

13394.8

52

ast-miR-282

22

TAGCCTCTTCTAGGCTTTGTCT

8.1

0.3

6.8

10.2

0.3

0.9

53

ast-miR-283

19

AAATATCAGCTGGTAATTC

1.8

0.6

2.4

2.7

6.8

5.5

54

ast-miR-285

22

TAGCACCATTCGAAATCAGTAC

  

51.4

14.2

313.7

4.2

55

ast-miR-286

25

TGACTAGACCGAACACTCGCGTCCT

   

0.1

0.1

 

56

ast-miR-2944a-3p

22

TATCACAGTAGTTGTACTTTAA

  

0.1

 

0.2

 

57

ast-miR-2944a-5p

22

GAAGGAACTTCTGCTGTGATCT

  

0.4

1.3

0.8

0.4

58

ast-miR-2944b-3p

22

TATCACAGCAGTAGTTACCTGA

   

0.1

0.0

 

59

ast-miR-2944b-5p

23

GAAGGAACTCCCGGTGTGATATA

  

0.1

0.1

0.1

0.2

60

ast-miR-2945

19

TGACTAGAGGCAGACTCGT

0.4

 

1.6

2.5

3.5

4.7

61

ast-miR-2a-3p

23

TATCACAGCCAGCTTTGAAGAGC

110.3

13.3

280.0

375.7

475.8

601.6

62

ast-miR-2a-5p

21

ACTCTCAAAGTGGTTGTGAAA

14.0

2.0

79.0

35.4

8.8

36.5

63

ast-miR-2b

24

TATCACAGCCAGCTTTGATGAGCT

51.5

8.5

139.2

307.4

295.8

225.8

64

ast-miR-2c

18

TCACAGCCAGCTTTGATG

7.4

 

0.2

0.8

4.3

 

65

ast-miR-305-3p

22

CGGCACATGTTGGAGTACACTT

5.1

0.3

8.8

8.8

20.8

21.9

66

ast-miR-305-5p

21

ATTGTACTTCATCAGGTGCTC

95.2

9.9

189.8

288.3

168.4

277.6

67

ast-miR-306

22

TCAGGTACTGGATGACTCTCAG

410.0

39.4

556.8

792.3

845.3

2160.1

68

ast-miR-307-3p

20

TCACAACCTCCTTGAGTGAG

  

0.3

0.6

1.2

1.5

69

ast-miR-307-5p

20

ACTCACTCAACCTGGGTGTG

  

0.1

0.1

0.1

0.2

70

ast-miR-308

18

AATCACAGGAGTATACTG

32.4

2.6

22.7

30.4

13.0

24.5

71

ast-miR-309

22

TCACTGGGCAAAGTTTGTCGCA

   

0.1

  

72

ast-miR-31

21

TGGCAAGATGTTGGCATAGCT

14.0

2.8

48.6

53.6

104.0

63.7

73

ast-miR-315

23

TTTTGATTGTTGCTCAGAAAGCC

129.1

34.6

75.8

129.8

382.3

980.6

74

ast-miR-317

25

TGAACACATCTGGTGGTATCTCAGT

111.8

17.6

60.2

47.6

480.5

1900.9

75

ast-miR-33

21

GTGCATTGTAGTTGCATTGCA

 

0.3

0.2

0.2

0.6

0.5

76

ast-miR-34

23

TGGCAGTGTGGTTAGCTGGTTGT

18.0

2.8

8.5

8.0

789.4

657.3

77

ast-miR-375

22

TTTGTTCGTTTGGCTCGAGTTA

72.1

6.0

8.5

11.6

55.5

145.1

78

ast-miR-7

21

TGGAAGACTAGTGATTTTGTT

8.5

2.3

1.9

2.4

13.6

2.9

79

ast-miR-71-3p

22

TCTCACTACCTTGTCTTTCATG

26.5

2.8

64.8

80.9

97.0

98.0

80

ast-miR-71-5p

22

AGAAAGACATGGGTAGTGAGAT

1.1

 

5.6

5.6

15.3

8.4

81

ast-miR-79-3p

23

ATAAAGCTAGATTACCAAAGCAT

0.4

0.6

1.5

3.0

2.3

3.8

82

ast-miR-79-5p

23

GCTTTGGCGCTTTAGCTGTATGA

  

0.3

0.6

0.2

0.5

83

ast-miR-8-3p

23

TAATACTGTCAGGTAAAGATGTC

4190.3

577.3

3906.2

5280.5

8065.6

24812.4

84

ast-miR-8-5p

22

CATCTTACCGGGCAGCATTAGA

130.2

13.6

230.3

285.7

901.1

2144.5

85

ast-miR-87

19

GTGAGCAAATATTCAGGTG

0.4

 

0.2

0.2

1.3

1.3

86

ast-miR-927-3p

22

CAAAGCGTTTGGATTCTGAAAC

4.0

0.9

11.8

15.3

50.7

126.7

87

ast-miR-927-5p

22

TTTAGAATTCCTACGCTTTACC

22.8

7.1

146.7

97.7

866.4

934.0

88

ast-miR-929-3p

20

TCCCTAACGGAGTCAGATTG

    

0.2

0.4

89

ast-miR-929-5p

21

AAATTGACTCTAGTAGGGAGT

0.4

 

4.2

4.3

13.5

15.5

90

ast-miR-92a

20

TATTGCACTTGTCCCGGCCT

36.4

1.7

33.1

21.3

29.7

91.3

91

ast-miR-92b

22

AATTGCACTTGTCCCGGCCTGC

192.0

11.9

283.7

339.2

147.6

218.3

92

ast-miR-932

23

TCAATTCCGTAGTGCATTGCAGT

4.8

0.9

22.7

28.1

55.7

80.9

93

ast-miR-957

22

TGAAACCGTCCAAAACTGAGGC

68.4

24.4

268.1

366.7

898.2

819.6

94

ast-miR-965

22

TAAGCGTATAGCTTTTCCCATT

1.1

 

2.0

2.8

0.8

2.0

95

ast-miR-970-3p

21

TCATAAGACACACGCGGCTAT

43.4

3.4

75.9

131.4

313.4

453.4

96

ast-miR-980

19

TAGCTGCCTAGTGAAGGGC

0.4

 

1.6

1.9

13.3

37.8

97

ast-miR-981

22

TTCGTTGTCGACGAAACCTGCA

4.8

0.9

8.2

17.3

63.0

49.1

98

ast-miR-988-3p

22

CCCCTTGTTGCAAACCTCACGC

  

2.5

8.3

12.1

27.6

99

ast-miR-988-5p

21

GTGTGCTTTGTGACAATGAGA

  

0.1

 

0.2

 

100

ast-miR-989

21

TGTGATGTGACGTAGTGGTAC

  

4.5

2.1

0.5

55.1

101

ast-miR-993-3p

24

GAAGCTCGTTTCTATAGAGGTATC

4.4

2.3

6.7

9.2

14.7

28.5

102

ast-miR-993-5p

22

TACCCTGTAGTTCCGGGCTTTT

1.1

0.9

3.4

6.7

10.6

15.7

103

ast-miR-996

20

TGACTAGATTACATGCTCGT

68.8

6.5

149.5

199.4

175.1

315.8

104

ast-miR-998

21

TAGCACCATGAGATTCAGCTC

7.4

 

14.3

10.1

33.9

38.3

105

ast-miR-999

22

TGTTAACTGTAAGACTGTGTCT

210.0

24.9

440.1

609.1

2221.6

3492.3

106

ast-miR-9a

23

TCTTTGGTTATCTAGCTGTATGA

2025.1

406.1

1594.9

2663.9

321.4

1049.7

107

ast-miR-9c-3p

22

TAAAGCTTTAGTACCAGAGGTC

2.6

 

2.1

3.1

3.9

11.1

108

ast-miR-9c-5p

22

TCTTTGGTATTCTAGCTGTAGA

840.6

92.1

669.4

1056.2

366.8

1565.7

109

ast-miR-iab-4-3p

24

CGGTATACCTTCAGTATACGTAAC

   

0.1

  

110

ast-miR-iab-4-5p

22

ACGTATACTGAATGTATCCTGA

3.3

0.3

2.3

2.6

1.7

2.2

111

ast-miR-iab-8-5p

20

TTACGTATACTGAAGGTATA

  

0.1

0.2

0.2

0.2