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Table 2 The features of the mitochondrial genomes of Paramphistomum leydeni (PL) and Paramphistomum cervi (PC)

From: Mitochondrial and nuclear ribosomal DNA dataset supports that Paramphistomum leydeni (Trematoda: Digenea) is a distinct rumen fluke species

Gene Positions and nt sequence sizes (bp) Start and stop codons tRNA Anti-codons Intergenic nt (bp)
  PL (5’-3’) PC (5’-3’) PL PC PL PC PL PC
cox3 1-645 (645) 1-645 (645) ATG/TAG ATG/TAG    0 0
tRNA-His (H) 647-714 (68) 647-715 (69)    GTG GTG 1 3
cytb 717-1829 (1113) 720-1832 (1113) ATG/TAG ATG/TAG    2 4
SNCR 1830-1894 (64) 1833-1890 (58)      0 0
nad4L 1895-2158 (264) 1891-2154 (264) ATG/TAG ATG/TAG    0 0
nad4 2119-3399 (1281) 2115-3395 (1281) GTG/TAG GTG/TAG    −40 −40
tRNA-Gln (Q) 3404-3469 (66) 3398-3462 (65)    TTG TTG 4 2
tRNA-Phe (F) 3501-3567 (67) 3489-3553 (65)    GAA GAA 31 26
tRNA-Met (M) 3565-3629 (65) 3553-3615 (63)    CAT CAT −3 −1
atp6 3630-4145 (516) 3616-4131 (516) ATG/TAG ATG/TAG    0 0
nad2 4153-5025 (873) 4139-5011 (870) ATA/TAG GTG/TAG    7 7
tRNA-Val (V) 5049-5112 (64) 5014-5077 (64)    TAC TAC 23 2
tRNA-Ala (A) 5122-5187 (66) 5085-5154 (70)    TGC TGC 9 7
tRNA-Asp (D) 5197-5266 (70) 5165-5229 (65)    GTC GTC 9 10
nad1 5269-6165 (897) 5233-6129 (897) ATG/TAG ATG/TAG    2 3
tRNA-Asn (N) 6170-6235 (66) 6142-6207 (66)    GTT GTT 4 12
tRNA-Pro (P) 6235-6300 (66) 6208-6270 (63)    TGG TGG −1 0
tRNA-Ile (I) 6302-6363 (62) 6272-6334 (63)    GAT GAT 1 1
tRNA-Lys (K) 6370-6435 (66) 6344-6409 (66)    CTT CTT 6 9
nad3 6436-6792 (357) 6410-6766 (357) ATG/TAG ATG/TAG    0 0
tRNA-Ser (S1) 6810-6868 (59) 6785-6843 (59)    GCT GCT 17 18
tRNA-Trp (W) 6878-6941 (64) 6853-6915 (63)    TCA TCA 9 9
cox1 6942-8486 (1545) 6916-8460 (1545) ATA/TAG GTG/TAG    0 0
tRNA-Thr (T) 8500-8561 (62) 8470-8534 (65)    TGT TGT 13 9
rrnL 8562-9556 (995) 8535-9520 (986)      0 0
tRNA-Cys (C) 9557-9623 (67) 9527-9586 (60)    GCA GCA 0 6
rrnS 9624-10372 (749) 9592-10340 (749)      0 5
cox2 10373-10954 (582) 10341-10919 (579) ATG/TAG ATG/TAG    0 0
nad6 10948-11400 (453) 10920-11372 (453) GTG/TAG GTG/TAG    −7 0
tRNA-Tyr (Y) 11420-11485 (66) 11389-11455 (67)    GTA GTA 19 16
tRNA-Leu (L1) 11496-11557 (62) 11470-11536 (67)    TAG TAG 10 14
tRNA-Ser (S2) 11558-11624 (67) 11538-11609 (72)    TGA TGA 0 1
tRNA-Leu (L2) 11644-11708 (65) 11646-11710 (65)    TAA TAA 19 36
tRNA-Arg (R) 11709-11775 (67) 11713-11779 (67)    TCG TCG 0 2
nad5 11775-13358 (1584) 11780-13360 (1581) GTG/TAA ATG/TAG    −1 0
tRNA-Gly (G) 13359-13431 (73) 13365-13433 (69)    TCC TCC 0 4
tRNA-Glu (E) 13440-13507 (68) 13451-13515 (65)    TTC TTC 8 17
LNCR 13508-14050 (543) 13516-14014 (499)      0 0
  1. SNCR: Short non-coding region. LNCR: Long non-coding region.
  2. Data of P. cervi (PC) mt genome sequence was derived from Yan et al. (2013) [21] (GenBank accession No. KF_475773).