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Table 1 Sequence differences between two inverted repeats (IR) of the apicoplast genome of Cyclospora cayetanensis a

From: Genetic similarities between Cyclospora cayetanensis and cecum-infecting avian Eimeria spp. in apicoplast and mitochondrial genomes

Reference position

Reference

Alleleb

Count

Coverage (fold)

Allele frequency (%)

Mean read quality score

4096

C

-

272

413

65.86

28.94

4098

A

C

265

414

64.01

30.84

4100

A

G

271

420

64.52

30.46

4117

G

A

300

462

64.94

30.19

4136

G

A

276

417

66.19

31.3

4142

A

T

241

380

63.42

27.8

4149

C

T

210

340

61.76

30.39

4153

A

T

198

324

61.11

29.71

29970

T

A

171

302

56.62

30.46

29974

G

A

180

320

56.25

31.23

29981

T

A

218

358

60.89

28.16

29987

C

T

249

390

63.85

30.38

30006

C

T

275

418

65.79

30.59

30023

T

C

241

388

62.11

30.16

30025

T

G

240

387

62.02

30.48

30027

G

-

246

385

63.90

28.14

  1. aThe variable fragment is located in a 58-bp region (5′- CTATAACGGTCCAAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAA-3′) of the LSU rRNA gene of each IR
  2. bDash indicates a nucleotide deletion