|
Reference position
|
Reference
|
Alleleb
|
Count
|
Coverage (fold)
|
Allele frequency (%)
|
Mean read quality score
|
|---|
|
4096
|
C
|
-
|
272
|
413
|
65.86
|
28.94
|
|
4098
|
A
|
C
|
265
|
414
|
64.01
|
30.84
|
|
4100
|
A
|
G
|
271
|
420
|
64.52
|
30.46
|
|
4117
|
G
|
A
|
300
|
462
|
64.94
|
30.19
|
|
4136
|
G
|
A
|
276
|
417
|
66.19
|
31.3
|
|
4142
|
A
|
T
|
241
|
380
|
63.42
|
27.8
|
|
4149
|
C
|
T
|
210
|
340
|
61.76
|
30.39
|
|
4153
|
A
|
T
|
198
|
324
|
61.11
|
29.71
|
|
29970
|
T
|
A
|
171
|
302
|
56.62
|
30.46
|
|
29974
|
G
|
A
|
180
|
320
|
56.25
|
31.23
|
|
29981
|
T
|
A
|
218
|
358
|
60.89
|
28.16
|
|
29987
|
C
|
T
|
249
|
390
|
63.85
|
30.38
|
|
30006
|
C
|
T
|
275
|
418
|
65.79
|
30.59
|
|
30023
|
T
|
C
|
241
|
388
|
62.11
|
30.16
|
|
30025
|
T
|
G
|
240
|
387
|
62.02
|
30.48
|
|
30027
|
G
|
-
|
246
|
385
|
63.90
|
28.14
|
-
aThe variable fragment is located in a 58-bp region (5′- CTATAACGGTCCAAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAA-3′) of the LSU rRNA gene of each IR
-
bDash indicates a nucleotide deletion
