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Table 2 Characteristics of the 20 microsatellite loci used in this study for Leishmania infantum genotyping

From: Multilocus microsatellite typing of Leishmania infantum isolates in monitored Leishmania/HIV coinfected patients

Locus GenBank accession no. Allele size (bp) Dye label Ta (°C) Na H S H o
Li22-35c AM050045 90–106 VIC 58 5 0.191 0.042
Li45-24c AM050048 88–108 NED 58 5 0.208 0.060
Li71-5/2c AM050050 104–108 VIC 54 3 0.280 0.042
Li72-20c AM050057 87–95 VIC 50 4 0.275 0.042
LiBTAa nd 226–246 VIC 58 4 0.316 0.167
LiBTGa nd 219–257 6-FAM 58 7 0.340 0.104
LIST7021b AF427869 228–246 6-FAM 54 6 0.338 0.143
LIST7024b AF427872 198–224 VIC 59 3 0.049 0.000
LIST7025b AF427873 171–179 6-FAM 56 1 0.000 0.000
LIST7026b AF427874 201–231 NED 56 4 0.089 0.000
LIST7028b AF427876 104–108 VIC 58 2 0.049 0.000
LIST7031b AF427879 166–174 PET 54 1 0.000 0.000
LIST7033b AF427881 196–226 6-FAM 58 5 0.349 0.411
LIST7035b AF427883 188–202 PET 56 6 0.373 0.146
LIST7037b AF427885 178–194 6-FAM 58 5 0.320 0.411
LIST7038b AF427886 122–130 NED 56 3 0.088 0.000
LIST7039b AF427887 199–215 PET 58 5 0.128 0.143
Rossi1d X76394 104–110 6-FAM 59 3 0.100 0.000
Rossi2d X76393 140–160 VIC 57 6 0.335 0.185
TubCAc nd 74–84 6-FAM 58 2 0.100 0.000
Mean value    4 0.196 0.095
  1. Ta: annealing temperature (thermocycling conditions); Na: number of alleles; Hs: Nei’s unbiased genetic diversity within subsamples; Ho: observed heterozygosity (Nei & Chesser, 1983 [17]); aBulle, 2002 [32]; Hide, 2013 [24]; bJamjoon, 2002 [33]; cOchsenreither, 2006 [11]; dRossi, 1994 [34]