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Table 2 Primer sequences for real-time and nested PCR protocols, along with sequence of positive control used for real time PCR reactions. Sequencing primers are also listed

From: A new real-time PCR protocol for detection of avian haemosporidians

Protocol/primer

Primer sequence

Real-Time PCR – Haemoproteus, Plasmodium, Leucocytozoon

 R330Fa

5′- CGTTCTTAACCCAGCTCACG - 3′

 R480RLa

5′- GCCTGGAGGTWAYGTCC – 3′

  P. relictum – Pos. Control

5′- GGGAACAAACTGCCTCAAGACGTTCTTAACCAGCT

 (Accession # NC012426)

CACGCATCGCTTCTAACGGTGAACTCTCATTCCAA

TGGAACCTTGTTCAAGTTCAAATAGATTGGTAAGG

TATAGCGTTTACTATCGAATGAAACAATGTGTTCC

ACCGCTAGTGTTTGCTTCTAACATTCCATTGCTTAT

AACTGTATGGACGTAACCTCCAGGCAAAGAAAAT

GACCGGTC – 3′

Nested PCR – Haemoproteus and Plasmodium

 H332Fa

5′ - GAGAATTATGGAGYGGATGGTG - 3′

 HAEMNR2b

5′ - AGAGGTGTAGCATATCTATCTAC- 3′

 H350Fa

5′ – GGTGTTTTAGATATATGCATGC - 3′

 HAEMR2c

5′ - GCATTATCTGGATGTGATAATGGT - 3′

Nested PCR – Leucocytozoon

 

 HAEMNFId

5′ - CATATATTAAGAGAAITATGGAG - 3′

 HAEMNR3d

5′ - ATAGAAAGATAAGAAATACCATTC - 3′

 L350Fe

5′ - GGTGTTTTAGATACTTA -3′

 L890Re

5′ - TACAATATGTTGAGGTGTTTG - 3′

Sequencing – Haemoproteus and Plasmodium

 FIFIf

5′ – GGGTCAAATGAGTTTCTGG - 3′

 R2f

5′ - GCTGTATCATACCCTAAAGG - 3′

Sequencing – Leucocytozoon

 

 L545Fe

5′ - ACAAATGAGTTTCTGGGGA - 3′

 L825Re

5′ - GCAATTCCAAATAAACTTTGAA - 3′

  1. aDesigned for this study
  2. b[27]
  3. c[25]
  4. d[26]
  5. e[17]
  6. f[56]