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Table 1 The most expressed genes in iron-deficient T. vaginalis

From: Nitric oxide maintains cell survival of Trichomonas vaginalis upon iron depletion

GeneID TrichDB Annotation RPKM (IR) RPKM (ID)
METABOLIC ENZYMES
TVAG_171090 Malate dehydrogenase, putative 1171.96 19,482.82
TVAG_344880 Alcohol dehydrogenase, putative 115.8 3,902.75
TVAG_038440 Fructose-bisphosphate aldolase, putative 63.12 1,715.45
TVAG_196700 Glutamate dehydrogenase, putative 41 1,787.34
OXIDOREDUCTASES
TVAG_167830 Regulator of cell morphogenesis and NO signaling (RCMNS) (metal ion binding) 237.68 2,776.24
TVAG_107080 4-carboxymuconolactone decarboxylase 2 11.21 3,030.84
TVAG_256720 4-carboxymuconolactone decarboxylase 1 2.82 3,363.03
TVAG_336320 Hydroxylamine reductase, putative 70.86 1089.89
PROTEOLYTIC PROCESSES
TVAG_184150 Ubiquitin, putative 113.42 1563.65
TVAG_476160 Clan MG, family M24, aminopeptidase P-like metallopeptidase 77.07 1534.83
TVAG_386080 Clan MG, family M24, aminopeptidase P-like metallopeptidase 129.25 7169.21
OTHERS
TVAG_469020 Biotin synthase, putative 4.15 1,508.21
TVAG_321740 Conserved hypothetical protein 67.62 8933.47
TVAG_059980 Conserved hypothetical protein 102.07 1,355.29
TVAG_307440 Conserved hypothetical protein 7.34 1,956.57
TVAG_491130 Conserved hypothetical protein 75.06 2,060.76
TVAG_488900 Conserved hypothetical protein 1.48 2,220.44
  1. The genes listed in this table are only highly expressed (RPKM > 1000, fold-change > 10) in iron-deficient (ID) cells compared to iron-rich (IR) cells. RPKM, reads per kilobase per million mapped reads