Panel 1
|
Marker
|
Forward Primer 5'- 3'
|
Reverse Primer 5'- 3'
|
Dye
|
Size Range (bp)
|
Repeat
|
A
|
Niger
|
Zanzibar
|
---|
|
H
o
|
H
e
|
H
o
|
H
e
|
---|
Panel 1
|
C102
|
TGTCTCTGTGAATGACCGAAT
|
TTAGATGAATAATAATGTTGAAACCAC
|
VIC
|
184-199
|
ATT
|
6
|
0.42
|
0.37
|
0.02
|
0.02
|
Sh1
|
GCATCCAATTTCGTACAC
|
CCACATTAGGCCAACAAG
|
VIC
|
245-284
|
AAT
|
13
|
0.76
|
0.72
|
0.84
|
0.80
|
Sh14
|
GTCCTCCTTCCCTCTTTG
|
CACATTCGTCCTAGATATCG
|
NED
|
184-240
|
ACTC
|
15
|
0.94
|
0.85
|
0.86
|
0.88
|
C131
|
CTTGTCATTTGGGCATTGTG
|
CATGGTGAGGTTCAAACGTG
|
NED
|
253-265
|
AAT
|
4
|
0.00
|
0.00
|
0.00
|
0.00
|
Sh6
|
GGTGGATTACGCAATAG
|
TTTAATCAACCGGGTGTC
|
NED
|
309-321
|
AAT
|
7
|
0.48
|
0.44
|
0.84
|
0.76
|
Sh9
|
GGGATGTATGCAGACTTG
|
TTGTTTGGCTGCAGTAAC
|
6-FAM
|
197-227
|
AAT
|
11
|
0.46
|
0.76
|
0.46
|
0.86
|
Sh3
|
GCTGAGCTTGAGATTG
|
CTTCTGTCCCATCGATACC
|
6-FAM
|
270-366
|
AAT
|
30
|
0.76
|
0.86
|
0.94
|
0.86
|
C111
|
CCCTTGTCTTCAATGCGTTA
|
GAACGTCTAACTGGCGATCA
|
PET
|
201-225
|
ATT
|
9
|
0.74
|
0.67
|
0.76
|
0.68
|
Sh7
|
TCCAAGCACCATTATCAAG
|
ACGGAAACTTGTTGAAATG
|
PET
|
293-311
|
AAT
|
7
|
0.46
|
0.62
|
0.42
|
0.48
|
Panel 2
|
Sh2
|
TTAGTGTGTTTGGCTTCAAC
|
CCTCGAATGAAATCCTGAC
|
NED
|
155-218
|
AAT
|
21
|
0.84
|
0.90
|
0.56
|
0.89
|
Sh5
|
TGTGCACAAGAAAGATTAAATG
|
ACGACAATGTTGCAAGTTC
|
NED
|
263-314
|
AAT
|
16
|
0.78
|
0.81
|
0.36
|
0.48
|
Sh13
|
GAGCAGCTATTTCGTATCG
|
ACCGTGGACAGTTCATCAG
|
6-FAM
|
163-211
|
AAT
|
17
|
0.78
|
0.72
|
0.68
|
0.64
|
Sh4
|
CCCATCGCTGATATTAAAG
|
TCTAGTCGTCTTGGGATCC
|
6-FAM
|
268-313
|
AAT
|
13
|
0.84
|
0.78
|
0.72
|
0.79
|
Sh10
|
CGCATGTCATACCTATCTCC
|
GCTTATCAGGCCTATCTCC
|
PET
|
183-207
|
AAT
|
9
|
0.18
|
0.34
|
0.74
|
0.70
|
Sh12
|
CGTCTTAGTGAGCCAGATG
|
CTCGTGGACATCATCAG
|
PET
|
245-278
|
AAC
|
11
|
0.06
|
0.06
|
0.56
|
0.65
|
Sh8
|
CTAAACTGGCAAGATTTC
|
CAACGTGCCTTTATTTC
|
PET
|
282-321
|
AAT
|
14
|
0.76
|
0.81
|
0.84
|
0.83
|
Sh11
|
TTGGTTTAGAAATTACATCACC
|
CCAACAATATTAATGGACAGC
|
VIC
|
183-213
|
ATC
|
9
|
0.68
|
0.58
|
0.68
|
0.69
|
Sh15
|
CTTTCAGTAGGATTTGTTG
|
CGACGTCAAGCACTGTAC
|
VIC
|
274-301
|
ATC
|
10
|
0.78
|
0.65
|
0.50
|
0.466
|
-
Panel = single mulitplex PCR. A = observed number of alleles. Dye = the fluorescent dye label of the forward primer (VIC = green, NED = yellow, 6-FAM = Blue, PET = red). Ho = observed heterozygosity, He = expected heterozygosity