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Table 4 Effective population size estimates and tests for population bottleneck events

From: Evidence of temporal stability in allelic and mitochondrial haplotype diversity in populations of Glossina fuscipes fuscipes (Diptera: Glossinidae) in northern Uganda

 

Effective population size

Bottleneck

Population

Ne (Jorde/Ryman)

95 % CI

Ne (LD)

95 % CI

Mean HE

TPM P-value

Mode shift

KT-0

–

–

Infinite

78.6-Infinte

0.6240

0.470

Normal L-shaped

KT-22

103

73–138

315.4

114.5-Infinite

0.6332

0.161

Normal L-shaped

OC-0

–

–

101.6

36.4-Infinite

0.5564

0.042

Normal L-shaped

OC-27

962

669–1309

171.9

91.8–789.2

0.5722

0.137

Normal L-shaped

AM-0

–

–

197.7

68.4-Infinite

0.5445

0.149

Normal L-shaped

AM-27

448

306–615

356.5

142.8-Infinite

0.5477

0.008**

Shifted mode

KR-0

–

–

62.3

52.5–75.4

0.6806

0.666

Normal L-shaped

KR-35

468

359–590

83.0

72.2–96.7

0.6274

0.316

Normal L-shaped

AP-0

–

–

Infinite

43.7-Infinite

0.5901

0.609

Normal L-shaped

AP-48

691

491–924

Infinite

536.8-Infinite

0.5898

0.137

Normal L-shaped

KO-0

–

–

252.9

43.3-Infinte

0.6324

0.202

Normal L-shaped

KO-29

363

258–485

382.7

122.0-Infinite

0.6250

0.039

Normal L-shaped

AR-0

–

–

Infinite

80.8-Infinite

0.6825

0.217

Normal L-shaped

AR-52

816

593–1074

1379.8

209.7-infinite

0.6663

0.248

Normal L-shaped

PD-0

–

–

51

23.5-Infinite

0.6671

0.372

Normal L-shaped

PD-52

759

551–998

527.6

116.4-infinite

0.6134

0.510

Normal L-shaped

MY-0

–

–

2504.2

55.2-Infinite

0.6380

0.410

Normal L-shaped

MY-38

313

227–412

349.0

129.5-Infinite

0.6126

0.353

Normal L-shaped

  1. Population codes are shown and the number of generations since first sampling, effective population size estimates (Ne) and 95 % confidence intervals (CI), and mean HE as well as the probability value from a bottleneck test. Ne was calculated using two methods; the moments based temporal method of Waples [45] based on Jorde and Ryman [46], and the Linkage Disequilibrium model (LD). Significance of tests for population bottlenecks assumed the two-phase mutation model (TPM) and is displayed as a p-value based on 1-tailed Wilcoxon's test, bold indicates P < 0.05, bold** indicates significance after Benjamini-Hochberg multiple testing correction (P < 0.03889)
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Parasites & Vectors

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