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Table 5 Pairwise distances (total character differences) between cox1 sequences of haplotypes and isolates of Lymnaea neotropica and L. viator

From: Human fascioliasis endemic areas in Argentina: multigene characterisation of the lymnaeid vectors and climatic-environmental assessment of the transmission pattern

Haplotype codes and isolates

GenBank acc. no.

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

1. L. neotropica L.neo-cox1a

AM494008

                

2. L. neotropica L.neo-cox1b

FN356741

1

               

3. L. neotropica L.neo-cox1c

JF461485

6

7

              

4. L. neotropica L.neo-cox1d

JF461486

70

71

72

             

5. L. neotropica L.neo-cox1e

KT215350

0

1

6

70

            

6. L. neotropica isolate NtC1

JN872452

1

2

7

71

1

           

7. L. neotropica isolate NtC2

JN872453

0

1

6

70

0

1

          

8. L. neotropica isolate NtC3

JN872454

1

2

7

71

1

2

1

         

9. L. viator ventr. L.via-cox1a

AM494010

28

29

33

66

28

29

28

27

        

10. L. viator L.via-cox1b

JN051373

33

34

38

70

33

34

33

34

11

       

11. L. viator L.via-cox1c

JN051374

34

35

39

71

34

35

34

35

12

1

      

12. L. viator L.via-cox1d

KT215351

29

30

32

65

29

30

29

28

5

12

13

     

13. L. viator isolate VxC1

JN872449

29

30

32

65

29

30

29

28

7

14

15

2

    

14. L. viator isolate VxC2

JN872450

29

30

32

65

29

30

29

28

5

12

13

0

2

   

15. L. viator isolate VxC3

JN872451

29

30

34

66

29

30

29

28

1

12

13

6

8

6

  

16. L. viator isolate LVX2

JN614397

28

29

33

66

28

29

28

27

0

11

12

5

7

5

1

 
  1. Distances calculated in MEGA 6.0.6 using total number of differences, including transitions (ts) + transversions (tv); gaps treated as complete deletion. Haplotype codes are listed in Table 1