Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

Koehler, Anson V.; Haydon, Shane R.; Jex, Aaron R.; Gasser, Robin B.

doi:10.1186/s13071-016-1607-1

Table 1 Summary of epidemiological and molecular information pertaining to the pathogen test-positive faecal samples collected from the Melbourne Water catchments (July 2011 to November 2015)

From: Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

Sample code	Host	Locality	Date	Pathogen	Typing	Method	GenBank accession no.
MR4158	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	Sequencing	KU531671
MR4198	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	SSCP	KU531671^a
MR4199	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	SSCP	KU531671^a
MR4200	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	SSCP	KU531671^a
MR4211	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	SSCP	KU531671^a
MR4231	Wombat	Maroondah	12-Dec-13	Cryptosporidium fayeri	SSU	Sequencing	KU531672
GV3073	Kangaroo	Greenvale	16-Oct-12	*Cryptosporidium fayeri-* like	SSU	Sequencing	KU531656
YY3126	Kangaroo	Yan Yean	16-Oct-12	*Cryptosporidium fayeri* -like	SSU	Sequencing	KU531658
C3616	Wombat	Cardinia	31-Jul-13	*Cryptosporidium fayeri* -like	SSU	Sequencing	KU531666
YY6091	Kangaroo	Yan Yean	09-Jul-15	Cryptosporidium sp. EGK1 genotype (C. fayeri-like)	SSU	Sequencing	KU531695
YY6016	Kangaroo	Yan Yean	09-Jul-15	*Cryptosporidium* sp. Kangaroo genotype I ( *C. fayeri* -like)	SSU	Sequencing	KU531694
OS2785	Deer	O'Shannassy	Jul-12	Cryptosporidium hominis	SSU	Sequencing	na
UY3513	Deer	Upper Yarra	25-Jun-13	Cryptosporidium hominis	SSU	Sequencing	KU531663
MR3443	Wallaby	Maroondah	09-May-13	Cryptosporidium hominis (IbA10G2)	gp60	Sequencing	KU531699
GV3952	Kangaroo	Greenvale	20-Aug-13	Cryptosporidium parvum	SSU	Sequencing	KU531669
SV5306	Rabbit	Silvan	26-Nov-14	Cryptosporidium cuniculus	SSU	Sequencing	KU531683
GV6100	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA24)	SSU	SSCP	KU531697^a
GV6100	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA24)	gp60	Sequencing	KU531704
SV5945	Rabbit	Silvan	21-May-15	*Cryptosporidium cuniculus* (VbA25)	SSU	Sequencing	KU531693
SV5945	Rabbit	Silvan	21-May-15	*Cryptosporidium cuniculus* (VbA25)	gp60	Sequencing	KU531702
GV6098	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA25)	SSU	Sequencing	KU531696
GV6098	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA25)	gp60	Sequencing	KU531703
YY3790	Kangaroo	Yan Yean	20-Aug-13	Cryptosporidium cuniculus (VbA26)	gp60	Sequencing	KM366140
YY3790	Kangaroo	Yan Yean	20-Aug-13	Cryptosporidium cuniculus (VbA26)	SSU	Sequencing	KM366142
YY3809	Kangaroo	Yan Yean	20-Aug-13	Cryptosporidium cuniculus (VbA26)	gp60	Sequencing	KU531700
GV5010	Rabbit	Greenvale	04-Sep-14	Cryptosporidium cuniculus (VbA26)	gp60	Sequencing	KU531701
GV6131	Rabbit	Greenvale	09-Jul-15	Cryptosporidium cuniculus (VbA26)	gp60	SSCP	KU531705^a
GV6132	Rabbit	Greenvale	09-Jul-15	Cryptosporidium cuniculus (VbA26)	gp60	SSCP	KU531705^a
GV6137	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA26)	SSU	Sequencing	KU531697
GV6137	Rabbit	Greenvale	09-Jul-15	*Cryptosporidium cuniculus* (VbA26)	gp60	Sequencing	KU531705
C5371	Emu	Cardinia	08-Jan-15	Cryptosporidium canis	SSU	Sequencing	KU531684
OS3311	Deer	O'Shannassay	08-Apr-13	*Cryptosporidium suis* -like	SSU	Sequencing	KU531660
C2202	Deer	Cardinia	Aug-11	Cryptosporidium ubiquitum	SSU	Sequencing	KU531647
OS5301	Deer	O'Shannassay	26-Nov-14	Cryptosporidium ubiquitum	SSU	Sequencing	KU531682
OS6339	Deer	O'Shannassay	20-Nov-15	Cryptosporidium ubiquitum	SSU	Sequencing	KU531698
C3604	Wombat	Cardinia	31-Jul-13	*Cryptosporidium ubiquitum* -like	SSU	Sequencing	KU531665
OS5267	Wombat	O'Shannassay	26-Nov-14	*Cryptosporidium ubiquitum* -like	SSU	Sequencing	KU531681
GV3044	Kangaroo	Greenvale	16-Oct-12	Cryptosporidium macropodum	SSU	Sequencing	KU531655
GV4434	Kangaroo	Greenvale	14-Mar-14	Cryptosporidium macropodum	SSU	Sequencing	KU531673
GV4441	Kangaroo	Greenvale	14-Mar-14	Cryptosporidium macropodum	SSU	Sequencing	KU531674
GV4992	Kangaroo	Greenvale	04-Sep-14	Cryptosporidium macropodum	SSU	Sequencing	KU531677
GV4994	Kangaroo	Greenvale	04-Sep-14	Cryptosporidium macropodum	SSU	SSCP	KU531677^a
GV5000	Kangaroo	Greenvale	04-Sep-14	Cryptosporidium macropodum	SSU	SSCP	KU531677^a
YY5091	Kangaroo	Yan Yean	04-Sep-14	Cryptosporidium macropodum	SSU	Sequencing	KU531678
GV5505	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	Sequencing	KU531685
GV5543	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	Sequencing	KU531686
GV5552	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	Sequencing	KU531687
GV5558	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	SSCP	KU531688^a
GV5563	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	SSCP	KU531688^a
GV5573	Kangaroo	Greenvale	20-Feb-15	Cryptosporidium macropodum	SSU	Sequencing	KU531688
OS2816	Wallaby	O'Shannassy	Jul-12	*Cryptosporidium macropodum* -like	SSU	Sequencing	KU531649
OS2827	Wallaby	O'Shannassy	Jul-12	Cryptosporidium macropodum-like	SSU	Sequencing	KU531652
SV3188	Wallaby	Silvan	19-Nov-12	Cryptosporidium macropodum-like	SSU	Sequencing	KU531659
OS3365	Wallaby	O'Shannassay	08-Apr-13	*Cryptosporidium macropodum* -like	SSU	Sequencing	KU531661
C3623	Wallaby	Cardinia	31-Jul-13	Cryptosporidium macropodum-like	SSU	Sequencing	KU531667
OS5235	Wallaby	O'Shannassay	26-Nov-14	*Cryptosporidium macropodum* -like	SSU	Sequencing	KU531679
UY5645	Waterbird	Upper Yarra	30-Mar-15	*Cryptosporidium* sp. duck genotype-like	SSU	Sequencing	KU531689
UY5649	Waterbird	Upper Yarra	30-Mar-15	*Cryptosporidium* sp. duck genotype-like	SSU	SSCP	KU531689^a
UY2975	Waterbird	Upper Yarra	30-Aug-12	*Cryptosporidium* sp. duck-like genotype	SSU	Sequencing	KU531654
OS4106	Deer	O'Shannassay	19-Nov-13	Cryptosporidium ryanae-like MW2	SSU	Sequencing	KU531670
OS5242	Deer	O'Shannassay	26-Nov-14	Cryptosporidium ryanae-like MW2	SSU	Sequencing	KU531680
C5875	Deer	Cardinia	21-May-15	Cryptosporidium ryanae-like MW2	SSU	Sequencing	KU531692
OS2316	Deer	O'Shannassy	Dec-11	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531648
YY3874	Deer	Yan Yean	20-Aug-13	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531668
OS4606	Deer	O'Shannassay	14-Apr-14	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531675
C4873	Deer	Cardinia	24-Jul-14	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531676
UY5700	Deer	Upper Yarra	30-Mar-15	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531690
C5846	Deer	Cardinia	21-May-15	Cryptosporidium ryanae-like MW4	SSU	Sequencing	KU531691
OS2821	Deer	O'Shannassy	Jul-12	*Cryptosporidium ryanae-* like MW7	SSU	Sequencing	KU531650
OS2822	Deer	O'Shannassy	Jul-12	*Cryptosporidium ryanae-* like MW7	SSU	Sequencing	KU531651
MR3424	Deer	Maroondah	09-May-13	*Cryptosporidium ryanae-* like MW7	SSU	Sequencing	KU531662
UY2900	Deer	Upper Yarra	30-Aug-12	Cryptosporidium sp. deer genotype	SSU	Sequencing	KU531653
YY3101	Deer	Yan Yean	16-Oct-12	Cryptosporidium sp. deer genotype	SSU	Sequencing	KU531657
UY3518	Deer	Upper Yarra	25-Jun-13	Cryptosporidium sp. deer genotype	SSU	Sequencing	KU531664
TH2278	Rabbit	Thomson	25-Sep-11	Giardia duodenalis AI	tpi	Sequencing	KU531708
TH2291	Deer	Thomson	25-Sep-11	*Giardia duodenalis* AI	tpi	Sequencing	KU531709
SV2382	Kangaroo	Silvan	2-Dec-11	Giardia duodenalis AI	tpi	Sequencing	KU531710
MR4752	Wombat	Maroondah	18-Jun-14	Giardia duodenalis AI	tpi	Sequencing	KU531718
TAR2129	Deer	Tarago	07-Jul-11	Giardia duodenalis AIII	tpi	Sequencing	KU531706
TAR2135	Deer	Tarago	07-Jul-11	Giardia duodenalis AIII	tpi	Sequencing	KU531707
OS4115	Deer	O'Shannassy	19-Nov-13	Giardia duodenalis AIII	tpi	Sequencing	KU531711
OS4135	Deer	O'Shannassy	19-Nov-13	Giardia duodenalis AIII	tpi	Sequencing	KU531712
UY4624	Deer	Upper Yarra	20-May-14	Giardia duodenalis AIII	tpi	Sequencing	KU531713
UY4634	Deer	Upper Yarra	20-May-14	Giardia duodenalis AIII	tpi	Sequencing	KU531714
UY4635	Deer	Upper Yarra	20-May-14	Giardia duodenalis AIII	tpi	Sequencing	KU531715
UY4638	Deer	Upper Yarra	20-May-14	Giardia duodenalis AIII	tpi	Sequencing	KU531716
UY4661	Deer	Upper Yarra	20-May-14	Giardia duodenalis AIII	tpi	Sequencing	KU531717

Bold-type indicates a novel genotype. na: not available; length of the sequence determined (< 200 bp) was less than that required to be assigned a GenBank accession number; sequence available from authors. ^a indicates accession number represented by an SSCP profile

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ISSN: 1756-3305

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