TY - JOUR AU - Cvitkovic, I. AU - Jurica, M. S. PY - 2013 DA - 2013// TI - Spliceosome database: a tool for tracking components of the spliceosome JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks999 DO - 10.1093/nar/gks999 ID - Cvitkovic2013 ER - TY - JOUR AU - Chen, W. AU - Moore, M. J. PY - 2014 DA - 2014// TI - The spliceosome: disorder and dynamics defined JO - Curr Opin Struct Biol VL - 24 UR - https://doi.org/10.1016/j.sbi.2014.01.009 DO - 10.1016/j.sbi.2014.01.009 ID - Chen2014 ER - TY - JOUR AU - Wahl, M. C. AU - Will, C. L. AU - Luhrmann, R. PY - 2009 DA - 2009// TI - The spliceosome: design principles of a dynamic RNP machine JO - Cell VL - 136 UR - https://doi.org/10.1016/j.cell.2009.02.009 DO - 10.1016/j.cell.2009.02.009 ID - Wahl2009 ER - TY - JOUR AU - Leung, A. K. AU - Nagai, K. AU - Li, J. PY - 2011 DA - 2011// TI - Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis JO - Nature VL - 473 UR - https://doi.org/10.1038/nature09956 DO - 10.1038/nature09956 ID - Leung2011 ER - TY - JOUR AU - Zhou, L. AU - Hang, J. AU - Zhou, Y. AU - Wan, R. AU - Lu, G. AU - Yin, P. PY - 2014 DA - 2014// TI - Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA JO - Nature VL - 506 UR - https://doi.org/10.1038/nature12803 DO - 10.1038/nature12803 ID - Zhou2014 ER - TY - JOUR AU - Rodgers, M. L. AU - Tretbar, U. S. AU - Dehaven, A. AU - Alwan, A. A. AU - Luo, G. AU - Mast, H. M. PY - 2016 DA - 2016// TI - Conformational dynamics of stem II of the U2 snRNA JO - RNA VL - 22 UR - https://doi.org/10.1261/rna.052233.115 DO - 10.1261/rna.052233.115 ID - Rodgers2016 ER - TY - JOUR AU - Ro-Choi, T. S. AU - Choi, Y. C. PY - 2012 DA - 2012// TI - Chemical approaches for structure and function of RNA in postgenomic era JO - J Nucleic Acids VL - 2012 UR - https://doi.org/10.1155/2012/369058 DO - 10.1155/2012/369058 ID - Ro-Choi2012 ER - TY - JOUR AU - Adachi, H. AU - Yu, Y. T. PY - 2014 DA - 2014// TI - Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation JO - World J Biol Chem VL - 5 UR - https://doi.org/10.4331/wjbc.v5.i4.398 DO - 10.4331/wjbc.v5.i4.398 ID - Adachi2014 ER - TY - JOUR AU - Yu, A. T. AU - Ge, J. AU - Yu, Y. T. PY - 2011 DA - 2011// TI - Pseudouridines in spliceosomal snRNAs JO - Protein Cell VL - 2 UR - https://doi.org/10.1007/s13238-011-1087-1 DO - 10.1007/s13238-011-1087-1 ID - Yu2011 ER - TY - JOUR AU - Egloff, S. AU - O’Reilly, D. AU - Murphy, S. PY - 2008 DA - 2008// TI - Expression of human snRNA genes from beginning to end JO - Biochem Soc Trans VL - 36 UR - https://doi.org/10.1042/BST0360590 DO - 10.1042/BST0360590 ID - Egloff2008 ER - TY - JOUR AU - Mroczek, S. AU - Dziembowski, A. PY - 2013 DA - 2013// TI - U6 RNA biogenesis and disease association JO - Wiley Interdiscip Rev RNA VL - 4 UR - https://doi.org/10.1002/wrna.1181 DO - 10.1002/wrna.1181 ID - Mroczek2013 ER - TY - JOUR AU - Orioli, A. AU - Pascali, C. AU - Pagano, A. AU - Teichmann, M. AU - Dieci, G. PY - 2012 DA - 2012// TI - RNA polymerase III transcription control elements: themes and variations JO - Gene VL - 493 UR - https://doi.org/10.1016/j.gene.2011.06.015 DO - 10.1016/j.gene.2011.06.015 ID - Orioli2012 ER - TY - JOUR AU - Martinez-Calvillo, S. AU - Vizuet-de-Rueda, J. C. AU - Florencio-Martinez, L. E. AU - Manning-Cela, R. G. AU - Figueroa-Angulo, E. E. PY - 2010 DA - 2010// TI - Gene expression in trypanosomatid parasites JO - J Biomed Biotechnol VL - 2010 UR - https://doi.org/10.1155/2010/525241 DO - 10.1155/2010/525241 ID - Martinez-Calvillo2010 ER - TY - JOUR AU - Bitar, M. AU - Boroni, M. AU - Macedo, A. M. AU - Machado, C. R. AU - Franco, G. R. PY - 2013 DA - 2013// TI - The spliced leader trans-splicing mechanism in different organisms: molecular details and possible biological roles JO - Front Genet VL - 4 UR - https://doi.org/10.3389/fgene.2013.00199 DO - 10.3389/fgene.2013.00199 ID - Bitar2013 ER - TY - JOUR AU - Gunzl, A. PY - 2010 DA - 2010// TI - The pre-mRNA splicing machinery of trypanosomes: complex or simplified? JO - Eukaryot Cell VL - 9 UR - https://doi.org/10.1128/EC.00113-10 DO - 10.1128/EC.00113-10 ID - Gunzl2010 ER - TY - JOUR AU - Papasaikas, P. AU - Valcarcel, J. PY - 2016 DA - 2016// TI - The Spliceosome: The Ultimate RNA Chaperone and Sculptor JO - Trends Biochem Sci VL - 41 UR - https://doi.org/10.1016/j.tibs.2015.11.003 DO - 10.1016/j.tibs.2015.11.003 ID - Papasaikas2016 ER - TY - JOUR AU - Fantoni, A. AU - Dare, A. O. AU - Tschudi, C. PY - 1994 DA - 1994// TI - RNA polymerase III-mediated transcription of the trypanosome U2 small nuclear RNA gene is controlled by both intragenic and extragenic regulatory elements JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.3.2021 DO - 10.1128/MCB.14.3.2021 ID - Fantoni1994 ER - TY - JOUR AU - Nakaar, V. AU - Dare, A. O. AU - Hong, D. AU - Ullu, E. AU - Tschudi, C. PY - 1994 DA - 1994// TI - Upstream tRNA genes are essential for expression of small nuclear and cytoplasmic RNA genes in trypanosomes JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.10.6736 DO - 10.1128/MCB.14.10.6736 ID - Nakaar1994 ER - TY - JOUR AU - Djikeng, A. AU - Ferreira, L. AU - D’Angelo, M. AU - Dolezal, P. AU - Lamb, T. AU - Murta, S. PY - 2001 DA - 2001// TI - Characterization of a candidate Trypanosoma brucei U1 small nuclear RNA gene JO - Mol Biochem Parasitol VL - 113 UR - https://doi.org/10.1016/S0166-6851(00)00384-4 DO - 10.1016/S0166-6851(00)00384-4 ID - Djikeng2001 ER - TY - JOUR AU - Tschudi, C. AU - Ullu, E. PY - 2002 DA - 2002// TI - Unconventional rules of small nuclear RNA transcription and cap modification in trypanosomatids JO - Gene Expr VL - 10 ID - Tschudi2002 ER - TY - JOUR AU - Nakaar, V. T. AU - Tschudi, C. AU - Ullu, E. PY - 1995 DA - 1995// TI - An unusual liaison: small nuclear and cytoplasmic RNA genes team up with tRNA genes in trypanosomatid protozoa JO - Parasitol Today VL - 11 UR - https://doi.org/10.1016/0169-4758(95)80085-9 DO - 10.1016/0169-4758(95)80085-9 ID - Nakaar1995 ER - TY - JOUR AU - Nakaar, V. AU - Gunzl, A. AU - Ullu, E. AU - Tschudi, C. PY - 1997 DA - 1997// TI - Structure of the Trypanosoma brucei U6 snRNA gene promoter JO - Mol Biochem Parasitol VL - 88 UR - https://doi.org/10.1016/S0166-6851(97)00078-9 DO - 10.1016/S0166-6851(97)00078-9 ID - Nakaar1997 ER - TY - JOUR AU - Li, L. AU - Otake, L. R. AU - Xu, Y. AU - Michaeli, S. PY - 2000 DA - 2000// TI - The trans-spliceosomal U4 RNA from the monogenetic trypanosomatid Leptomonas collosoma. Cloning and identification of a transcribed tRNA-like element that controls its expression JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.4.2259 DO - 10.1074/jbc.275.4.2259 ID - Li2000 ER - TY - JOUR AU - Robinson, K. A. AU - Beverley, S. M. PY - 2003 DA - 2003// TI - Improvements in transfection efficiency and tests of RNA interference (RNAi) approaches in the protozoan parasite Leishmania JO - Mol Biochem Parasitol VL - 128 UR - https://doi.org/10.1016/S0166-6851(03)00079-3 DO - 10.1016/S0166-6851(03)00079-3 ID - Robinson2003 ER - TY - JOUR AU - Martinez-Calvillo, S. AU - Sunkin, S. M. AU - Yan, S. AU - Fox, M. AU - Stuart, K. AU - Myler, P. J. PY - 2001 DA - 2001// TI - Genomic organization and functional characterization of the Leishmania major Friedlin ribosomal RNA gene locus JO - Mol Biochem Parasitol VL - 116 UR - https://doi.org/10.1016/S0166-6851(01)00310-3 DO - 10.1016/S0166-6851(01)00310-3 ID - Martinez-Calvillo2001 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: a multiple sequence alignment method with reduced time and space complexity JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-113 DO - 10.1186/1471-2105-5-113 ID - Edgar2004 ER - TY - JOUR AU - Lorenz, R. AU - Bernhart, S. H. AU - Honer Zu Siederdissen, C. AU - Tafer, H. AU - Flamm, C. AU - Stadler, P. F. PY - 2011 DA - 2011// TI - ViennaRNA Package 2.0. JO - Algorithms Mol Biol VL - 6 UR - https://doi.org/10.1186/1748-7188-6-26 DO - 10.1186/1748-7188-6-26 ID - Lorenz2011 ER - TY - JOUR AU - Carey, M. F. AU - Peterson, C. L. AU - Smale, S. T. PY - 2013 DA - 2013// TI - The primer extension assay JO - Cold Spring Harb Protoc VL - 2013 UR - https://doi.org/10.1101/pdb.prot071902 DO - 10.1101/pdb.prot071902 ID - Carey2013 ER - TY - JOUR AU - Martinez-Calvillo, S. AU - Nguyen, D. AU - Stuart, K. AU - Myler, P. J. PY - 2004 DA - 2004// TI - Transcription initiation and termination on Leishmania major chromosome 3 JO - Eukaryot Cell VL - 3 UR - https://doi.org/10.1128/EC.3.2.506-517.2004 DO - 10.1128/EC.3.2.506-517.2004 ID - Martinez-Calvillo2004 ER - TY - JOUR AU - Motorin, Y. AU - Muller, S. AU - Behm-Ansmant, I. AU - Branlant, C. PY - 2007 DA - 2007// TI - Identification of modified residues in RNAs by reverse transcription-based methods JO - Methods Enzymol VL - 425 UR - https://doi.org/10.1016/S0076-6879(07)25002-5 DO - 10.1016/S0076-6879(07)25002-5 ID - Motorin2007 ER - TY - JOUR AU - Barth, S. AU - Hury, A. AU - Liang, X. H. AU - Michaeli, S. PY - 2005 DA - 2005// TI - Elucidating the role of H/ACA-like RNAs in trans-splicing and rRNA processing via RNA interference silencing of the Trypanosoma brucei CBF5 pseudouridine synthase JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M503465200 DO - 10.1074/jbc.M503465200 ID - Barth2005 ER - TY - JOUR AU - Hofstetter, H. AU - Kressman, A. AU - Birnstiel, M. L. PY - 1981 DA - 1981// TI - A split promoter for a eucaryotic tRNA gene JO - Cell VL - 24 UR - https://doi.org/10.1016/0092-8674(81)90348-2 DO - 10.1016/0092-8674(81)90348-2 ID - Hofstetter1981 ER - TY - JOUR AU - Baker, R. E. AU - Gabrielsen, O. AU - Hall, B. D. PY - 1986 DA - 1986// TI - Effects of tRNATyr point mutations on the binding of yeast RNA polymerase III transcription factor C JO - J Biol Chem VL - 261 ID - Baker1986 ER - TY - JOUR AU - Ivens, A. C. AU - Peacock, C. S. AU - Worthey, E. A. AU - Murphy, L. AU - Aggarwal, G. AU - Berriman, M. PY - 2005 DA - 2005// TI - The genome of the kinetoplastid parasite, Leishmania major JO - Science VL - 309 UR - https://doi.org/10.1126/science.1112680 DO - 10.1126/science.1112680 ID - Ivens2005 ER - TY - JOUR AU - Downing, T. AU - Imamura, H. AU - Decuypere, S. AU - Clark, T. G. AU - Coombs, G. H. AU - Cotton, J. A. PY - 2011 DA - 2011// TI - Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.123430.111 DO - 10.1101/gr.123430.111 ID - Downing2011 ER - TY - JOUR AU - Peacock, C. S. AU - Seeger, K. AU - Harris, D. AU - Murphy, L. AU - Ruiz, J. C. AU - Quail, M. A. PY - 2007 DA - 2007// TI - Comparative genomic analysis of three Leishmania species that cause diverse human disease JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng2053 DO - 10.1038/ng2053 ID - Peacock2007 ER - TY - JOUR AU - Rogers, M. B. AU - Hilley, J. D. AU - Dickens, N. J. AU - Wilkes, J. AU - Bates, P. A. AU - Depledge, D. P. PY - 2011 DA - 2011// TI - Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.122945.111 DO - 10.1101/gr.122945.111 ID - Rogers2011 ER - TY - JOUR AU - Raymond, F. AU - Boisvert, S. AU - Roy, G. AU - Ritt, J. F. AU - Legare, D. AU - Isnard, A. PY - 2012 DA - 2012// TI - Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr834 DO - 10.1093/nar/gkr834 ID - Raymond2012 ER - TY - JOUR AU - Hartshorne, T. AU - Agabian, N. PY - 1990 DA - 1990// TI - A new U2 RNA secondary structure provided by phylogenetic analysis of trypanosomatid U2 RNAs JO - Genes Dev VL - 4 UR - https://doi.org/10.1101/gad.4.12a.2121 DO - 10.1101/gad.4.12a.2121 ID - Hartshorne1990 ER - TY - JOUR AU - Tschudi, C. AU - Richards, F. F. AU - Ullu, E. PY - 1986 DA - 1986// TI - The U2 RNA analogue of Trypanosoma brucei gambiense: implications for a splicing mechanism in trypanosomes JO - Nucleic Acids Res VL - 14 UR - https://doi.org/10.1093/nar/14.22.8893 DO - 10.1093/nar/14.22.8893 ID - Tschudi1986 ER - TY - JOUR AU - Wang, P. AU - Palfi, Z. AU - Preusser, C. AU - Lücke, S. AU - Lane, W. S. AU - Kambach, C. PY - 2006 DA - 2006// TI - Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei JO - EMBO J VL - 25 UR - https://doi.org/10.1038/sj.emboj.7601328 DO - 10.1038/sj.emboj.7601328 ID - Wang2006 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER - TY - JOUR AU - Padilla-Mejia, N. E. AU - Florencio-Martinez, L. E. AU - Figueroa-Angulo, E. E. AU - Manning-Cela, R. G. AU - Hernandez-Rivas, R. AU - Myler, P. J. PY - 2009 DA - 2009// TI - Gene organization and sequence analyses of transfer RNA genes in trypanosomatid parasites JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-232 DO - 10.1186/1471-2164-10-232 ID - Padilla-Mejia2009 ER - TY - JOUR AU - Hitchcock, R. A. AU - Zeiner, G. M. AU - Sturm, N. R. AU - Campbell, D. A. PY - 2004 DA - 2004// TI - The 3' termini of small RNAs in Trypanosoma brucei JO - FEMS Microbiol Lett VL - 236 ID - Hitchcock2004 ER - TY - JOUR AU - Ambrosio, D. L. AU - Silva, M. T. AU - Cicarelli, R. M. PY - 2007 DA - 2007// TI - Cloning and molecular characterization of Trypanosoma cruzi U2, U4, U5, and U6 small nuclear RNAs JO - Mem Inst Oswaldo Cruz VL - 102 UR - https://doi.org/10.1590/S0074-02762007000100017 DO - 10.1590/S0074-02762007000100017 ID - Ambrosio2007 ER - TY - JOUR AU - Ben-Shlomo, H. AU - Levitan, A. AU - Beja, O. AU - Michaeli, S. PY - 1997 DA - 1997// TI - The trypanosomatid Leptomonas collosoma 7SL RNA gene. Analysis of elements controlling its expression JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.24.4977 DO - 10.1093/nar/25.24.4977 ID - Ben-Shlomo1997 ER - TY - JOUR AU - Velez-Ramirez, D. E. AU - Florencio-Martinez, L. E. AU - Romero-Meza, G. AU - Rojas-Sanchez, S. AU - Moreno-Campos, R. AU - Arroyo, R. PY - 2015 DA - 2015// TI - BRF1, a subunit of RNA polymerase III transcription factor TFIIIB, is essential for cell growth of Trypanosoma brucei JO - Parasitology VL - 142 UR - https://doi.org/10.1017/S0031182015001122 DO - 10.1017/S0031182015001122 ID - Velez-Ramirez2015 ER - TY - JOUR AU - Broadbent, S. AU - Woude, M. AU - Aziz, N. PY - 2010 DA - 2010// TI - Accurate and simple sizing of primer extension products using a non-radioactive approach facilitates identification of transcription initiation sites JO - J Microbiol Methods VL - 81 UR - https://doi.org/10.1016/j.mimet.2010.03.021 DO - 10.1016/j.mimet.2010.03.021 ID - Broadbent2010 ER -