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Table 2 Hoferellus alosae n. sp. SSU rDNA diversity in different rivers. Location and frequency of single nucleotide polymorphic (SNP) site changes and number of individual nucleotide changes identified in 901 bp cloned SSU rDNA fragments of H. alosae n. sp. from Alosa alosa (6 clones per fish sequenced)

From: Repatriation of an old fish host as an opportunity for myxozoan parasite diversity: The example of the allis shad, Alosa alosa (Clupeidae), in the Rhine

River-fish individuala SNP sites and number of changes Other nt changes Total sites with nt changes
91
C → T
95
A → G
519
T → C
522
T → C
585
A → G
603
C → T
655
C → T
820
C → T
Garonne - F39 1/6 4 5
Garonne - F240 1/6 2 3
Garonne - F243 1/6 1/6b 3 5
Garonne - F241 1/6 6 7
Garonne - F247 3 3
Garonne - F248 2/6 4 5
Dordogne - F179 6/6 6/6 6/6 6/6 6/6 6/6 4 10
Dordogne - F187 1/6 1/6 1/6 1/6 1/6 2/6 3 9
Dordogne - F188 3/6 5/6 5/6 2/6 5/6 5/6 3 9
Rhine - D281 3/6 14 15
Rhine - D290 1/6 6/6 16 18
  1. aCompare Additional file 1: Table S1
  2. bNot considered a polymorphic site in Garonne as change observed in only 1/36 clones