Table 2 Hoferellus alosae n. sp. SSU rDNA diversity in different rivers. Location and frequency of single nucleotide polymorphic (SNP) site changes and number of individual nucleotide changes identified in 901 bp cloned SSU rDNA fragments of H. alosae n. sp. from Alosa alosa (6 clones per fish sequenced)
River-fish individuala | SNP sites and number of changes | Other nt changes | Total sites with nt changes | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
91 C → T | 95 A → G | 519 T → C | 522 T → C | 585 A → G | 603 C → T | 655 C → T | 820 C → T | |||
Garonne - F39 | – | – | – | – | – | – | 1/6 | – | 4 | 5 |
Garonne - F240 | – | – | – | – | – | – | 1/6 | – | 2 | 3 |
Garonne - F243 | – | – | – | – | – | – | 1/6 | 1/6b | 3 | 5 |
Garonne - F241 | – | – | – | – | – | – | 1/6 | – | 6 | 7 |
Garonne - F247 | – | – | – | – | – | – | – | – | 3 | 3 |
Garonne - F248 | – | – | – | – | – | – | 2/6 | – | 4 | 5 |
Dordogne - F179 | – | 6/6 | 6/6 | 6/6 | 6/6 | 6/6 | – | 6/6 | 4 | 10 |
Dordogne - F187 | – | 1/6 | 1/6 | 1/6 | 1/6 | 1/6 | – | 2/6 | 3 | 9 |
Dordogne - F188 | – | 3/6 | 5/6 | 5/6 | 2/6 | 5/6 | – | 5/6 | 3 | 9 |
Rhine - D281 | 3/6 | – | – | – | – | – | – | – | 14 | 15 |
Rhine - D290 | 1/6 | – | – | – | – | – | 6/6 | – | 16 | 18 |