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Table 1 Sequencing, assembly and annotation of the transcriptomes of adult P. westermani and P. skrjabini

From: Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini

  P. westermani P. skrjabini
Sequence data
 Raw read pairs 46,468,226 49,816,749
 Clean read pairs 34,096,586 38,071,235
Raw transcript assembly
 Unigenes 54,488 90,091
 Transcripts 71,317 126,745
Filtered transcript assembly
 Unigenes 21,586 25,825
 Transcripts 27,842 35,312
 Mean unigene length (bp) 813.0 ± 598.5 772.4 ± 570.0
 Mean transcript length (bp) 853.9 ± 600.1 834.8 ± 595.9
 Fragmentation rate 24.3 % 26.7 %
Predicted proteins
 Unique protein translations 26,431 32,706
 Unigenes 21,585 25,822
 Transcripts 27,838 35,305
 Mean protein length (aa) 271.0 ± 199.5 257.5 ± 190.0
Annotation (functional terms / unigenes)
 Unique InterPro domains 4,190 / 8,853 3,263 / 7,152
 Unique GO terms 1,197 / 6,964 1,024 / 5,460
 Unique KEGG orthologous groups 3,618 / 13,257 3,605 / 12,168
 Unique KEGG pathways 313 / 8,081 313 / 7,426
 Unique KEGG pathway modules 218 / 3,189 220 / 2,897