Fig. 7
From: Identification of internalin-A-like virulent proteins in Leishmania donovani
Molecular docking of L. donovani Inl-A-like proteins with human E-cadherin (hEC1). Directed docking solutions from each program were ranked and compared to identify consensus poses from all three programs (PatchDock [50, 51] followed by FireDock [58] refinement, HADDOCK [52–54] and ClusPro [55–57]). Average docking scores (FireDock refined glob scores, HADDOCK scores and ClusPro balanced scores) for the top three significant clusters (Cluster I, Cluster II and Cluster III) are plotted against the ligand root mean square deviations (RMSD) between the crystal complex (PDB ID: 1O6S) and representative docked poses of hEC1 with the L. donovani Inl-A-like proteins a E9B7L9 (region: 212–573), b E9BMT7 (region: 394–757) and c E9BUL5 (region: 386–782)