Skip to main content

Table 2 Genomic locations of the DNA probes in An. atroparvus, An. sinensis and An. gambiae. The locations were acquired using https://www.vectorbase.org/blast against genomic scaffold sequences of Anopheles atroparvus EBRO strain, Anopheles gambiae PEST strain, and Anopheles sinensis China strain. The e-values are indicated in parentheses after the locations

From: Structural divergence of chromosomes between malaria vectors Anopheles lesteri and Anopheles sinensis

 

Clone name

Source

Location in An. atroparvus

Location in An. sinensis

Location in An. gambiae

1

C20446

Additional file 1: Table S1

KI421895: 3842010–3842293(3e-128);

KI421886: 1702493– 1702773(8e-98)

AS2_scf7180000695491: 102496–102779(2e-144)

X:533418–533760(6e-107)

2

C07454

Additional file 1: Table S1

KI421888: 9432816–9432478(1e-76)

AS2_scf7180000695709:907649–907989(2e-175)

2L:47798210–47798610(1e-96)

3

SC1.21

supercont1.21

2R:KI421882: 9912851–10045608(0)

AS2_scf7180000696054: 1195628–1428863 (0)

3R:10,114,393–10,249,464 (0)

4

SC1.17

supercont1.17

KI421890: 1035344–1389232(0)

AS2_scf7180000695920: 44079–328299 (0)

3R:38705671–38,709,129(0)

5

SC1.27

supercont1.27

KI421890: 4179223–4195140(0)

AS2_scf718000069604:488088–637274(0)

3R:26871040–26944051(0)

6

Ag8026

AGAP008026

KI421890: 6995505–6995742(5e-91)

AS2_scf7180000696017: 292678–292915(3e-81)

3R:4,499,175–4,507,999(0)

7

Ag9894

AGAP009894

2R:KI421882: 15579762–15579934(2e-52)

AS2_scf7180000696027: 184208–184042(2e-53)

3R:44,903,740–44,912,595(0)

8

SC1.2

supercont1.2

KI421900: 2361929–2838297(0)

AS2_scf7180000696013: 1377801–1404489(0)

AS2_scf7180000695708: 122951–293931(0)

3R:49911437–50,354,787(0)

9

SC1.30

supercont1.30

KI421900: 1492320–1595685(0)

AS2_scf7180000696012: 752618–1009731(0)

2L:5,452,203–5,453,482(0)

10

SC1.9

supercont1.9

2L:KI421884: 10941708–11186226(0)

AS2_scf7180000695483: 403208–410683(0)

2L:47,782,863–48,943221(0)

11

SC1.5

supercont1.5

2L:KI421884: 77975–136.076(0)

KI421916: 285574–290011(0)

AS2_scf7180000696060: 1083588–1123553(0)

2L:33212653–33,787,298(0)

12

SC1.37

supercont1.37

KI421886: 11137039–11199731(0)

AS2_scf7180000696049: 2284815–2306994(0)

AS2_scf7180000696129: 257010–238213(0)

2L:36,690,171–36,694,229(0)

13

SC1.35

supercont1.35

2L:KI421886: 9346759–9417257(0)

AS2_scf7180000696058: 981634–993925(0)

2L:27,916,638–27,918,874(0)

14

SC1.23

supercont1.23

KI421891: 7010523–7018018(0)

AS2_scf7180000695983: 404330–428660(0)

2L:11,396,721–11,400,344(0)

15

SC1.48

supercont1.48

KI421891: 6344135–6346162(0)

AS2_scf7180000695983: 1052702–1083490(0)

2L:10,641,721–10,643,463(0)

16

C15834

Additional file 1: Table S1

2L:KI421886: 1283313–1283772(1e- 167)

AS2_scf718000069587: 127420–127901(0)

2L:26,996,740–26,997,260(9e-133)

17

SC1.22

supercont1.22

2L:KI421886: 998049–1001402(0)

AS2_scf7180000690255: 166481–193533(0)

2L:14,179,779–14,182,651(0)

18

SC1.15

supercont1.15

KI421924: 86788–88570(0)

AS2_scf7180000695974: 485746–503624(0)

2L:2,429,065–2,431,713(0)

19

SC1.8

supercont1.8

KI421888: 4420609–4428976(0)

AS2_scf7180000695742: 846781–876896(0)

2R:11,955,880–11,963,441(0)

20

SC1.20

supercont1.20

KI421897: 3217947–3221214(0)

AS2_scf7180000695544: 217804–260601(0)

2R:40,388,954–40,391,204(0)

21

SC1.33

supercont1.33

KI41906: 789097–795883(0)

AS2_scf7180000695987: 203015–213211(0)

2R:9,258,761–9,262,721(0)

22

SC1.18

supercont1.18

KI421885: 5623993–5627430(0)

AS2_scf7180000691904: 29065–60946(0)

2R:53,122,916–53,125,899(0)

23

SC1.12

supercont1.12

KI421883: 793616–798090(0)

AS2_scf7180000696020: 346403–391124(0)

2R:25,078,045–25,082,179(0)

24

SC1.6

supercont1.6

KI421885: 9679627–9684068(0)

AS2_scf7180000696131: 1492568–1550122(0)

2R:51,006,383–51,010,426(0)

25

SC1.31

supercont1.31

KI421908: 618377–622446(0)

AS2_scf7180000695941: 606638–632554(0)

2R:59,756,833–59,757,717(1e-156)

26

SC1.13

supercont1.13

KI421893: 6014521–6018625(0)

AS2_scf7180000696026: 562865–534327(0)

3L:8,096,738–8,100,402(0)

27

SC1.19

supercont1.19

KI421899: 300613–303079(0)

AS2_scf7180000695747: 106108–123837(0)

3L:26,049,483–26,051,315(0)

X:15,344,337–15,345,182(2e-162)

28

SC1.39

supercont1.39

KI421893: 834871–838718(0)

AS2_scf7180000695549: 106490–85123(0)

3L:18,123,024–18,126,350(0)

29

SC1.10

supercont1.10

KI421901: 2592790–2596255(0)

AS2_scf7180000695556: 1356231–1372024(0)

3L:32,619,834–32,623,094(0)

30

SC1.1

supercont1.1

KI421887: 668313–671209(0)

AS2_scf7180000696001: 472078–478139(0)

3L:19,636,991–19,638,260(0)

31

SC1.3

supercont1.3

KI421913: 114687–120327(0)

AS2_scf7180000695959: 371603–412620(0)

3L:3,313,404–3,318,603(0)