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Table 1 Summary statistics of C. irritans transcriptome

From: Comparative transcriptional profile of the fish parasite Cryptocaryon irritans

 

Tomont

Theront

Trophont

Sequencing

Raw reads (pair-end)

79,350,336

66,432,722

123,624,738

Clean reads (pair-end)

73,151,792

62,228,442

109,567,740

Clean ratio

92.19%

93.67%

88.63%

Assembly

 

Primary UniGene

Final UniGene

No. of unigenes

80,078

49,104

Total length (bp)

76,079,839

50,174,026

N50 length (bp)

1,302

1,338

Mean length (bp)

1,002

1,022

Largest transcripts (bp)

17,074

17,074

Eliminating contamination

 

No. of clean unigenes

Not T. ovatus

31,893

Not prokaryote CDS (≥ 100 aa)a

9,253

Annotation

NCBI-Nr

8,569

 

No. of best hits among 6 ciliate reference databases

Total no. of the reference databases

I. multifiliis

1,551

8,097

P. peptides

2,036

39,519

T. borealis

1,867

21,943

T. elliotti

1,332

22,562

T. malaccensis

1,252

26,378

T. thermophila

1,215

26,996

  1. aCDS (≥ 100 aa): only used the CDS region more than 300 bp