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Table 4 SNPs loci that exhibit significantly elevated FST value, identified in CDS regions

From: Genome-wide SNP analysis using 2b-RAD sequencing identifies the candidate genes putatively associated with resistance to ivermectin in Haemonchus contortus

Chr

BPa

Smoothed AMOVA FST

Smoothed AMOVA FST  P-value

Gene ID

Scaffold_11180

1238

1

< 0.05

 cds:HCOI00022400.t1

Scaffold_1311

4966

1

< 0.05

 cds:HCOI00277600.t1

Scaffold_1311

4972

1

< 0.05

 cds:HCOI00277600.t1

Scaffold_1409

28,964

1

< 0.05

 cds:HCOI00335100.t1

Scaffold_148

58,650

0.750886831

< 0.05

bcds:HCOI00506600.t3

Scaffold_148

65,574

0.755702686

< 0.05

bcds:HCOI00506600.t3

Scaffold_1483

47,819

1

< 0.05

bcds:HCOI00378500.t1

Scaffold_1511

40,561

1

< 0.05

 cds:HCOI00392800.t1

Scaffold_1595

23,974

1

< 0.05

 cds:HCOI00449900.t1

Scaffold_207

42,678

1

< 0.05

 cds:HCOI00808400.t1

Scaffold_2990

2020

1

< 0.05

bcds:HCOI01034200.t1

Scaffold_340

169,069

1

< 0.05

bcds:HCOI01315600.t1

Scaffold_340

169,075

1

< 0.05

cds:HCOI01315600.t1

Scaffold_3511

5425

1

< 0.05

bcds:HCOI01200700.t1

Scaffold_3558

3252

1

< 0.05

cds:HCOI01210600.t1

Scaffold_3989

17,378

1

< 0.05

cds:HCOI01318200.t3

Scaffold_4175

4946

1

< 0.05

bcds:HCOI01355700.t1

Scaffold_4362

13,965

1

< 0.05

bcds:HCOI00703000.t1

Scaffold_4362

13,975

1

< 0.05

 cds:HCOI00703000.t1

Scaffold_4362

13,977

1

< 0.05

 cds:HCOI00703000.t1

Scaffold_645

29,323

0.784867758

< 0.05

 cds:HCOI01894100.t1

Scaffold_6841

192

1

< 0.05

 cds:HCOI01753600.t1

Scaffold_774

42,481

1

< 0.05

bcds:HCOI02035600.t2

Scaffold_793

2897

0.465277778

0.16

bcds:HCOI02054500.t1

  1. aBase position of SNP loci located in a given scaffold
  2. bThe SNPs that are resistant strain-specific and only present in a resistant strain