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Table 4 Novel predicted miRNA candidates in the midgut of Ae. albopictus before and after the ingestion of blood meal using Mireap, RNAfold and Sfold software

From: Identification of microRNAs expressed in the midgut of Aedes albopictus during dengue infection

Provisional name

Sequence

Length

Supercontig

Start

End

Strand

Mfe

aal-mir-new1-5p

ACGCGGTCGTGCAGGAAATTATT

23

1.1

2,315,096

2,315,175

+

−39.1

aal-mir-new2-5p

TTTTGACACTAGAGCGGGGCC

21

1.103

2,525,153

2,525,242

-

−43.54

aal-mir-new3-3p

TGTTGGAACAGGAGCGGTGACTGG

24

1.1048

247,401

247,496

+

−27.2

aal-mir-new4-3p

ACGTGATCTCCCAGCTGGATT

21

1.104

2,576,089

2,576,167

+

−66.6

aal-mir-new4-5p

TCCAGCTGGGAGATCACGTAC

21

1.104

2,576,089

2,576,167

+

−66.6

aal-mir-new5-3p

TGAATAAGTGCGGTGAAGACA

21

1.1056

241,944

242,019

-

−48.4

aal-mir-new6-5p

TTGAAGGAATCCCTGGAGGCA

21

1.112

2,058,675

2,058,759

-

−32.1

aal-mir-new7-3p

TGGGGTTGGGCGGAAGGGTTG

21

1.1156

159,517

159,603

+

−29.8

aal-mir-new8-5p

ATTCGCACAACAGTCCCATGTT

22

1.125

2,091,162

2,091,244

+

−28.1

aal-mir-new9-3p

AGAATAAAGACTGCGTAGCCA

21

1.127

946,697

946,773

-

−27.7

aal-mir-new10-5p

TTGGCCATTTTGGAACCGGTA

21

1.13

1,968,890

1,968,963

-

−29.7

aal-mir-new11-5p

TTAAACATAACGTCGGAAGTA

21

1.134

1,382,610

1,382,700

-

−47.7

aal-mir-new12-5p

TCTGGAGCAACATTTGAAAAG

21

1.163

418,620

418,704

+

−24.54

aal-mir-new13-5p

GAATTTTGACATTAGAGCGGG

21

1.1642

60,969

61,064

+

−59.1

aal-mir-new14-5p

AGAATTTTGACACTAGAGCAG

21

1.194

1,043,569

1,043,645

-

−32.6

aal-mir-new15-5p

TGAAGGAATCCCTGGAGGCAT

21

1.2

2,052,582

2,052,676

-

−32.1

aal-mir-new16-3p

ATTTTTTTGACTGTAATTTTAT

22

1.245

1,560,997

1,561,095

-

−26.61

aal-mir-new17-5p

GGGAGCGAGATTAAGGCTTGCT

22

1.249

1,089,011

1,089,093

-

−29.81

aal-mir-new18-3p

ATCCCAAGACTGCGTAGCCGT

21

1.292

1,163,558

1,163,655

+

−42.4

aal-mir-new19-5p

CGAATTTTGACACTAGAGCGG

21

1.299

707,787

707,872

-

−29.5

aal-mir-new20-3p

GTCCCTCTGGCGCAGCGGATAGCG

24

1.32

579,217

579,298

-

−37.5

aal-mir-new21-3p

TAAGTGCGCTGAAGACATCA

20

1.379

448,733

448,811

+

−51.82

aal-mir-new22-5p

AACGGTCTAGGGTTCATGTCC

21

1.389

711,000

711,091

+

−30.4

aal-mir-new23-5p

AAATTTTGACACTAGAGCGGG

21

1.412

335,537

335,632

-

−48.1

aal-mir-new24-3p

ACGATGAGGATGATGATGGTG

21

1.457

821,927

822,021

+

−31.16

aal-mir-new25-5p

GGGGGAAATCCTGTACGCTGTATG

24

1.51

2,008,649

2,008,731

+

−33.4

aal-mir-new26-5p

TTGGCATAAGGACGTTTGGCA

21

1.526

450,600

450,680

+

−26.7

aal-mir-new27-5p

GAATTTTGACACTAGAGCAGG

21

1.57

59,966

60,061

+

−44.2

aal-mir-new28-3p

CTGAAGAACTTTGCCGAAGAC

21

1.576

275,303

275,389

+

−30.6

aal-mir-new29-5p

ATTAGAATGTGGAATCTGTTTT

22

1.62

576,218

576,309

-

−32.2

aal-mir-new30-5p

TGGGTATTTTCGGAACGGGCT

21

1.64

1,822,262

1,822,351

-

−28.7

aal-mir-new31-3p

CGGAATTCCAACTGATATCCA

21

1.68

2,729,339

2,729,428

-

−35.25

aal-mir-new32-5p

CAATTTTGACACTAGAGCGGG

21

1.784

432,120

432,215

-

−50.9

aal-mir-new33-5p

GGGAGCGAGATTAAGGCTTG

20

1.249

1,089,011

1,089,093

-

−29.81

aal-mir-3960-5p

GGCGGCGGCGGAGGTGGAGGT

21

1.506

579,623

579,702

+

−53.3

  1. Abbreviation: MFE minimum free energy