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Table 3 Capture probe sequences for DNA hybridization

From: Ultra-sensitive chemiluminescence imaging DNA hybridization method in the detection of mosquito-borne viruses and parasites

Pathogen

Capture probe

Sequence (5′ to 3′)a

Location

Referenceb

DENV

DEN-10731c

GGGAGGCCATGCGCCATGGAAGCTGTACGCATGGTGTAGCAGACT

10,443–10,487

GQ398257

DENV-1

DEN1-X10830

GCCCAACACCAGGGGAAG

10,520–10,537

FJ687426

DENV-2

DEN2-X10831

GCCCAAGGYGAGATGAAGCT

10,535–10,554

GQ398257

DENV-3

DEN3-X10829

GGCCCGAGCACTGAGGGAAGC

10,507–10,527

FJ898444

DENV-4

DEN4-X10714

CGTAATAATCCCTAGGGAGGCC

10,380–10,401

EF457906

JEV

JEV-10726

CCCACGGCCCAAGCCTCGTCTAGGAT

10,703–10,728

EF107523

YFV

YFV-10679

CCTCCGCTACCACCCTCCCAC

10,667–10,687

U54798

WNV

WNV-10768

AACTTCAAAGCCCAATGTCAGACCACG

10,650–10,676

EU249803

SLEV

SLE-10553

GTGCAAAGCCCCTCATTCCGACTCG

10,522–10,546

FJ753286

EEEV

EEEV-11424

GTTCGATGTACTTCCGAGCTATGGTGACGGTGG

11,393–11,425

AY705241

CHIKV

CHIKV-7427

ATGGCCACCTTTGCAAGCTC

7,421–7,440

DQ443544

WEEV

WEEV-8304

TCGAATGTCACGTTCCCATGCGACAAAC

8,277–8,304

AF214040

VEEV

VEEV-50

AAATGGAGAAAGTTCACGTTGACATCGAGG

42–71

U34999

Plasmodium

MAL-1207d

TTAGATTGCTTCCTTCAGTACCTTATGAGA

547–576

HQ283215

P. falciparum1

PF1-1187

CTTTCGAGGTGACTTTTAGA

532–551

HQ283215

P. falciparum2

PF2-1182

AGCATTTCTTAGGGAATGTTGATTTTATAT

573–602

HQ283222

P. vivax

PV-1173

AGAGTTTTCTCTTCGGAGTTTA

525–546

HQ283223

P. malariae

PM-1181

ATTCATATTAATGAGTGTTTCTTTTAGATAGCT

569–601

AF145336

P. ovale

PO-1152

TGGATGAAAARTTTTTAAATAAGAAAATTCCTTTC

391–425

JX977167

W. bancrofti

WB-53

AGTATGAATGGAATTTTTAGCAATTTTTTTG

52–82

L20344

B. malayi/ B. timori

BM-113

ATAAGCTTTTTTTAGTAGTTTTGGCACTTAATT

184–216

M12691

Quality controle

QC

TTTTTTTTTTTTTTTTTTTT

  

Negative controlf

NC

CAGAGATACATTGACC

1,215–1,230

NM_001128925

  1. aA repeat sequence of (T)12 with an amino-labeled 3′-end was conjugated to the 3′-end of all the capture probes
  2. bGenBank accession numbers
  3. cThis capture probe was used to detect all the DENVs
  4. dThis capture probe was used to detect all the malarial parasites
  5. eA repeat sequence of (T)20 with an amino-labeled 3′-end and biotin-labeled 5′-end were used to calibrate the CL signal values during DNA hybridization
  6. fA human-original sequence was used as negative control