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Table 2 RNAseq results for I. ricinus IRE/CTVM20 cells infected with A. phagocytophilum (Ap), LIV or TBEV at 168 hpi for selected genes associated with innate immunity and anti-pathogen response. Statistical significance denoted by P- or q-values highlighted in bold (< 0.05); genes are considered differentially expressed when both P and q < 0.05

From: Tick-borne pathogens induce differential expression of genes promoting cell survival and host resistance in Ixodes ricinus cells

Gene

VectorBase ID

Pathogen

Log2 fold-change

(168 hpi)

Statistical analysis

(P-value/q-value)

Toll

ISCW022740

Ap

0.34

0.261/0.587

LIV

2.08

0.00005/0.001

TBEV

1.64

0.00005/0.001

Toll

ISCW007727

Ap

-1.96

0.085/0.358

LIV

-3.85

0.0078/0.051

TBEV

-2.67

0.0017/0.022

Toll

ISCW007724

Ap

-0.12

0.729/0.888

LIV

-1.26

0.0008/0.009

TBEV

-0.77

0.018/0.116

Toll

ISCW017724

Ap

0.23

0.607/0.827

LIV

0.21

0.690/0.815

TBEV

-0.08

0.886/0.938

MyD88

ISCW008802

Ap

0.44

0.323/0.632

LIV

-0.36

No test

TBEV

-0.02

No test

JAK receptor

ISCW016699

Ap

0.85

0.035/0.232

LIV

0.14

No test

TBEV

0.30

No test

STAT 3

ISCW005692

Ap

0.23

0.451/0.731

LIV

0.43

0.141/0.328

TBEV

0.09

0.770/0.874

SOCS

ISCW019435

Ap

0.38

0.356/0.654

LIV

1.10

0.009/0.055

TBEV

1.21

0.005/0.046

Beta transducing Trp-Asp domain-containing protein

ISCW014204

Ap

-0.26

0.507/0.768

LIV

1.21

0.003/0.024

TBEV

0.39

No test

MAPK

ISCW018301

Ap

0.21

0.557/0.795

LIV

1.39

0.0006/0.007

TBEV

0.28

0.486/0.680

MAPK-activated protein kinase

ISCW015270

Ap

1.93

0.00005/0.003

LIV

2.16

0.00005/0.001

TBEV

2.10

0.00005/0.001

MAPK phosphatase 5

ISCW021412

Ap

1.22

0.004/0.077

LIV

2.29

0.00005/0.001

TBEV

1.35

0.002/0.026

FKBP

ISCW006566

Ap

1.10

0.0002/0.007

LIV

1.20

0.0001/0.002

TBEV

0.62

0.032/0.163

Slh1

ISCW018611

Ap

-0.13

0.669/0.862

LIV

0.60

0.002/0.018

TBEV

0.24

0.270/0.503

XBP1

ISCW007440

Ap

1.39

0.00005/0.003

LIV

0.67

0.0007/0.008

TBEV

0.53

0.014/0.097