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Table 3 Features of the tick pools characterized via next generation sequencing

From: Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey

Code

Province

Species and composition

Host collection method

Virus detected

Genomic target

Metagenome viral reads

Length

GenBank accession number

1

MG22

Mugla

R. sanguineus complex (1♀)

Flagging

Tick Phlebovirus (Antigone clade)

L segment

4000

6539

KY979165

S segment

155

440

KY984485

2

MG31

Mugla

R. bursa (6♀, 6♂)

Flagging

Tick Phlebovirus (Antigone clade)

L segment

343

6539

KY979166

3

MG36

Mugla

R. sanguineus complex (1♂)

Flagging

Tick Phlebovirus (Antigone clade)

L segment

1100

6374

KY979167

4

MG49

Mugla

H. marginatum (5♀)

Cattle

Tick Phlebovirus (KarMa clade)

L segment

544

6363

KY979168

5

MG48

Bayburt

H. marginatum (9♀, 4♂)

Cattle

CCHFV (AP92-like)

L segment

2863

11,988

KY979162

M segment

318

3852

KY979163

S segment

228

1484

KY979164