Transcriptome statistics | Valuea |
---|---|
Transcriptome assembly statistics | |
 Total number of transcripts | 23,631 |
 Number of transcripts > 500 bp | 19,903 |
 Number of transcripts > 1 kb | 13,330 |
 Number of transcripts > 10 kb | 80 |
 Shortest transcript length (bp) | 201 |
 Longest transcript length (bp) | 17,108 |
 Mean length of transcripts (bp) | 1793.5 |
 Median length of transcripts (bp) | 1193 |
 Transcript N50 (bp) | 2807 |
 Total bases in assembly (Mb) | 42.4 |
 Ambiguous base calls (Ns) | 0 |
 GC content (%) | 49 |
 Number of non-redundant predicted proteins | 13,584 |
Transcriptome annotation statisticsb | |
 BLASTx against NR | 12,756 (54.0%) |
 BLASTx against UniProtKB/TrEMBL | 16,451 (69.6%) |
 BLASTx against UniProtKB/Swiss-Prot | 10,572 (44.7%) |
 BLASTx against TSA-NR | 16,711 (70.7%) |
 BLASTx against Ixodes scapularis predicted peptides | 11,804 (50.0%) |
 BLASTx against EuKaryotic Orthologous Groups (KOG) | 9620 (40.7%) |
 BLASTx against AcariDB | 18,245 (77.2%) |
 Assigned with Gene Ontology (GO) termsc | 11,360 (48.1%) |
 Assigned with Enzyme Commission (EC) numbersc | 3493 (14.8%) |
 Assigned with KEGG orthology (KO) identifiersd | 4869 (20.6%) |
 Annotated in at least one database | 18,311 (77.5%) |