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Table 1 Sequence reads, read quality, and error rates

From: Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

Sample name Raw reads Clean reads Clean bases Error rate (%) Q20 (%) Q30 (%) GC content (%)
R_As24h 50,921,692 48,696,660 7.3G 0.02 96.79 91.95 50.91
S_As24h 48,149,668 45,974,494 6.9G 0.02 96.62 91.61 50.96
R_As13d 53,198,176 50,759,128 7.61G 0.02 96.49 91.41 49.43
S_As13d 48,863,236 46,720,102 7.01G 0.02 96.57 91.51 50.12
R_As19d 51,480,496 49,154,934 7.37G 0.02 96.59 91.57 50.71
S_As19d 45,488,110 43,544,700 6.53G 0.02 96.69 91.72 50.95
  1. Note: Raw reads, sequence reads from each RNA sample; Clean reads, reads following the removal of adapters, low quality reads or reads with 'N' > 1%; Clean bases, read number times read length; Error rate, calculated error rate based on read quality; Q20 (%) and Q30 (%), percentage of bases with Phred score > 20 or 30; GC content (%), percentage of G plus C in the sequences