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Table 1 Sequence reads, read quality, and error rates

From: Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

Sample name

Raw reads

Clean reads

Clean bases

Error rate (%)

Q20 (%)

Q30 (%)

GC content (%)

R_As24h

50,921,692

48,696,660

7.3G

0.02

96.79

91.95

50.91

S_As24h

48,149,668

45,974,494

6.9G

0.02

96.62

91.61

50.96

R_As13d

53,198,176

50,759,128

7.61G

0.02

96.49

91.41

49.43

S_As13d

48,863,236

46,720,102

7.01G

0.02

96.57

91.51

50.12

R_As19d

51,480,496

49,154,934

7.37G

0.02

96.59

91.57

50.71

S_As19d

45,488,110

43,544,700

6.53G

0.02

96.69

91.72

50.95

  1. Note: Raw reads, sequence reads from each RNA sample; Clean reads, reads following the removal of adapters, low quality reads or reads with 'N' > 1%; Clean bases, read number times read length; Error rate, calculated error rate based on read quality; Q20 (%) and Q30 (%), percentage of bases with Phred score > 20 or 30; GC content (%), percentage of G plus C in the sequences