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Table 5 Variants of flaB sequences generated in this study

From: Ticks and the city - are there any differences between city parks and natural forests in terms of tick abundance and prevalence of spirochaetes?

Species Variant (flaB) n GenBank Reference in GenBank Similarity (%) Nucleotide identity Type of area Origin of samples (n)
Ba Ba_V1a 118 MF150047 CP018262, KF990318, KX646195, KF894064 100 544/544 NU BNW (8), BSW (9), BPP (4), WBF (37), WKF (20), WLP (40)
Ba_V1b 1 MF150048 CP018262, KF990318, KX646195, KF894064 99.8 543/544 N BSW (1)
Ba_V2cc 1 MF150049 KR782215, JN828691 99.8 543/544 U WBF (1)
Ba_V2ct 9 MF150050 CP018262, KF990318, KX646195, KF894064 99.8 543/544 NU BNW (1), BSW (2), WBF (2), WLP (4)
Ba_V2tc 14 MF150051 KR782215, JN828691 100 544/544 NU BPP (1), WBF (7), WKF (1), WLP (5),
Bb Bb_V1a 1 MF150046 CP009656 98.0 536/547 (3 gaps) U WKF (1)
Bb_V2 13 MF150052 KX646201, KF422803, CP001205 100 544/544 NU BNW (2), WBF (1), WKF (9), WLP (1)
Bb_V3 5 MF150053 DQ016620, AB035618 100 544/544 U WBF (1), WKF (2), WLP (2)
Bb_V5 1 MF150054 CP009656 100 544/544 U WKF (1)
Bb_V6 1 MF150055 CP009656 99.8 543/544 U WKF (1)
Bb_V7 8 MF150056 DQ016625, KF836508, AB091813, AB052665, CP002312 100 544/544 NU BNW (1), WKF (3), WLP (4)
Bg Bg_vA 20 MF150057 HM345898, JN828685, AB178327 100 544/544 NU BNW (8), BSW (5), BPP (2), WBF (2), WKF (3)
  Bg_vAa 3 MF150058 AB091814 100 544/544 NU BNW (1)
  Bg_vB 11 MF150059 HM345905, KF836512 100 544/544 NU BNW (3), BSW (4), BPP (3), WKF (1)
  Bg_vBa 1 MF150060 KX646196, KF990320, JN828685, AB178327 99.8 543/544 N BSW (1)
  Bg_vBb 1 MF150061 HM345905, KF836512 99.8 543/544 N BPP (1)
  Bg_vC 6 MF150062 KX646196, KF990320, JN828685 99.8 543/544 N BNW (1), BSW (4), BPP (1)
  Bg_vCa 4 MF150063 KX646196, KF990320, JN828685 99.8 543/544 N BNW (1), BSW 1 BPP (2)
  Bg_vDa 1 MF150064 KF836510, KF918606 99.8 543/544 N BSW (1)
  Bg_vDb 1 MF150065 KX646202, JN828682, AB178330 99.3 543/544 N BSW (1)
  Bg_vDc 1 MF150066 KF990322 100 544/544 N BSW (1)
  Bg_vDd 4 MF150067 KX646202, JN828682, AB178330, KF894053, KF894052 100 544/544 N BNW (2), BSW (1), BPP (1)
  Bg_vDe 1 MF150068 KX646202, JN828682, AB178330, KF894053, KF894052 99.4 541/544 N BSW (1)
  Bg_vDf 2 MF150069 KX646202, JN828682, AB178330, KF894053, KF894052 99.6 542/544 N BNW (1), BSW (1)
  Bg_vEa 2 MF150070 KF990320, HM345902, JN828685, AB178327, KF894058 99.8 543/544 NU BSW (2)
  Bg_vEb 3 MF150071 KF894058, HM345901 100 544/544 NU BNW (1), WBF (1), WKF (1)
Bg Bg_vEc 4 MF150072 KF894061, KF422820, HM345897, AB178326 100 544/544 U WBF (2), WKF (1), WLP (1)
  Bg_vEd 2 MF150073 KF990320, HM345898, DQ650331, AB178327 99.4 541/544 N BSW (2)
  Bg_vEf 2 MF150074 DQ650336, DQ016621 99.6 542/544 N BSW (2)
Bl Bl_V1 4 MF150075 KF422804, DQ016623, HM345914 100 544/544 NU BSW (1), WKF (3)
Bm Bm_V2b 1 KT948324 KX646199, DQ650332 100 538/538 U WKF (1)
  Bm_V1b 4 KT948321-23 KX646199, DQ650332 99.8 537/538 NU BNW (3), WKF (1)
Bs Bs_V1 1 MF150076 KF422808, JF732881 100 544/544 U WBF (1)
Bv Bv_V1 7 MF150077 DQ650330, KX646197, AB178333, CP009117 100 544/544 NU BNW (3), BSW (1), BPP (1), WKF (2)
  Bv_V2 3 MF150078 HM345912, AB091805 99.8 543/544 N BNW (1), BSW (1), BPP (1)
  Bv_V3 1 MF150079 HM345912, AB091805 100 544/544 N BSW (1)
  Bv_V4 1 MF150080 KF422808, JF732881 99.8 543/544 N BSW (1)
  Bv_V6 1 MF150081 KF422808, JF732881 99.6 542/544 N BNW (1)
  1. Abbreviations: Ba B. afzelii, Bb B. burgdorferi, Bg B. garinii, Bl B. lusitaniae, Bm B. miyamotoi, Bs B. spielmani, Bv B. valaisiana, N natural, U urban, NU natural and urban, BNW Białowieża, North-West, BSW, Białowieża, South-West, BPP Białowieża, Palace Park, WBF Warsaw, Bielański Forest, WKF Warsaw, Kabacki Forest, WLP Warsaw, Łazienki Park
  2. aLonger sequence in the alignment (insertion)
  3. bShorter sequence in the alignment (deletion)