Skip to main content

Table 5 Variants of flaB sequences generated in this study

From: Ticks and the city - are there any differences between city parks and natural forests in terms of tick abundance and prevalence of spirochaetes?

Species

Variant (flaB)

n

GenBank

Reference in GenBank

Similarity (%)

Nucleotide identity

Type of area

Origin of samples (n)

Ba

Ba_V1a

118

MF150047

CP018262, KF990318, KX646195, KF894064

100

544/544

NU

BNW (8), BSW (9), BPP (4), WBF (37), WKF (20), WLP (40)

Ba_V1b

1

MF150048

CP018262, KF990318, KX646195, KF894064

99.8

543/544

N

BSW (1)

Ba_V2cc

1

MF150049

KR782215, JN828691

99.8

543/544

U

WBF (1)

Ba_V2ct

9

MF150050

CP018262, KF990318, KX646195, KF894064

99.8

543/544

NU

BNW (1), BSW (2), WBF (2), WLP (4)

Ba_V2tc

14

MF150051

KR782215, JN828691

100

544/544

NU

BPP (1), WBF (7), WKF (1), WLP (5),

Bb

Bb_V1a

1

MF150046

CP009656

98.0

536/547 (3 gaps)

U

WKF (1)

Bb_V2

13

MF150052

KX646201, KF422803, CP001205

100

544/544

NU

BNW (2), WBF (1), WKF (9), WLP (1)

Bb_V3

5

MF150053

DQ016620, AB035618

100

544/544

U

WBF (1), WKF (2), WLP (2)

Bb_V5

1

MF150054

CP009656

100

544/544

U

WKF (1)

Bb_V6

1

MF150055

CP009656

99.8

543/544

U

WKF (1)

Bb_V7

8

MF150056

DQ016625, KF836508, AB091813, AB052665, CP002312

100

544/544

NU

BNW (1), WKF (3), WLP (4)

Bg

Bg_vA

20

MF150057

HM345898, JN828685, AB178327

100

544/544

NU

BNW (8), BSW (5), BPP (2), WBF (2), WKF (3)

 

Bg_vAa

3

MF150058

AB091814

100

544/544

NU

BNW (1)

 

Bg_vB

11

MF150059

HM345905, KF836512

100

544/544

NU

BNW (3), BSW (4), BPP (3), WKF (1)

 

Bg_vBa

1

MF150060

KX646196, KF990320, JN828685, AB178327

99.8

543/544

N

BSW (1)

 

Bg_vBb

1

MF150061

HM345905, KF836512

99.8

543/544

N

BPP (1)

 

Bg_vC

6

MF150062

KX646196, KF990320, JN828685

99.8

543/544

N

BNW (1), BSW (4), BPP (1)

 

Bg_vCa

4

MF150063

KX646196, KF990320, JN828685

99.8

543/544

N

BNW (1), BSW 1 BPP (2)

 

Bg_vDa

1

MF150064

KF836510, KF918606

99.8

543/544

N

BSW (1)

 

Bg_vDb

1

MF150065

KX646202, JN828682, AB178330

99.3

543/544

N

BSW (1)

 

Bg_vDc

1

MF150066

KF990322

100

544/544

N

BSW (1)

 

Bg_vDd

4

MF150067

KX646202, JN828682, AB178330, KF894053, KF894052

100

544/544

N

BNW (2), BSW (1), BPP (1)

 

Bg_vDe

1

MF150068

KX646202, JN828682, AB178330, KF894053, KF894052

99.4

541/544

N

BSW (1)

 

Bg_vDf

2

MF150069

KX646202, JN828682, AB178330, KF894053, KF894052

99.6

542/544

N

BNW (1), BSW (1)

 

Bg_vEa

2

MF150070

KF990320, HM345902, JN828685, AB178327, KF894058

99.8

543/544

NU

BSW (2)

 

Bg_vEb

3

MF150071

KF894058, HM345901

100

544/544

NU

BNW (1), WBF (1), WKF (1)

Bg

Bg_vEc

4

MF150072

KF894061, KF422820, HM345897, AB178326

100

544/544

U

WBF (2), WKF (1), WLP (1)

 

Bg_vEd

2

MF150073

KF990320, HM345898, DQ650331, AB178327

99.4

541/544

N

BSW (2)

 

Bg_vEf

2

MF150074

DQ650336, DQ016621

99.6

542/544

N

BSW (2)

Bl

Bl_V1

4

MF150075

KF422804, DQ016623, HM345914

100

544/544

NU

BSW (1), WKF (3)

Bm

Bm_V2b

1

KT948324

KX646199, DQ650332

100

538/538

U

WKF (1)

 

Bm_V1b

4

KT948321-23

KX646199, DQ650332

99.8

537/538

NU

BNW (3), WKF (1)

Bs

Bs_V1

1

MF150076

KF422808, JF732881

100

544/544

U

WBF (1)

Bv

Bv_V1

7

MF150077

DQ650330, KX646197, AB178333, CP009117

100

544/544

NU

BNW (3), BSW (1), BPP (1), WKF (2)

 

Bv_V2

3

MF150078

HM345912, AB091805

99.8

543/544

N

BNW (1), BSW (1), BPP (1)

 

Bv_V3

1

MF150079

HM345912, AB091805

100

544/544

N

BSW (1)

 

Bv_V4

1

MF150080

KF422808, JF732881

99.8

543/544

N

BSW (1)

 

Bv_V6

1

MF150081

KF422808, JF732881

99.6

542/544

N

BNW (1)

  1. Abbreviations: Ba B. afzelii, Bb B. burgdorferi, Bg B. garinii, Bl B. lusitaniae, Bm B. miyamotoi, Bs B. spielmani, Bv B. valaisiana, N natural, U urban, NU natural and urban, BNW Białowieża, North-West, BSW, Białowieża, South-West, BPP Białowieża, Palace Park, WBF Warsaw, Bielański Forest, WKF Warsaw, Kabacki Forest, WLP Warsaw, Łazienki Park
  2. aLonger sequence in the alignment (insertion)
  3. bShorter sequence in the alignment (deletion)