Table 5 Intra-assemblage substitutions in tpi, gdh and bg sequences from assemblage A
Subtype (number) | Nucleotide positions and substitutions | GenBank ID | ||||
|---|---|---|---|---|---|---|
| Â | 58 | 122 | 255 | 269 | 307 | Â |
bg | ||||||
 Ref. sequence | C | C | A | A | C | KT728529 |
 A1 (4) | T | C | A | A | T | KY989576 |
 A2 (3) | C | C | A | A | C | KY989577 |
 A3 (1) | C | T | A | G | C | KY989578 |
 A4 (1) | C | C | G | A | C | KY989579 |
| Â | 8 | 120 | 180 | 240 | 300 | Â |
tpi | ||||||
 Ref. sequence | C | A | G | A | A | KU382249 |
 A (5) | C | A | G | A | A | KY989583 |
| Â | 56 | 120 | 180 | 240 | 300 | Â |
gdh | ||||||
 Ref. sequence | T | T | C | C | G | JF792402 |
 A (1) | T | T | C | C | G | MF034656 |