Table 1 Molecular identification, geographical and host origin of the COLTRYP isolates and reference stocks under study
Strain code | Host or Vector | State/Biome | Lineage | Hap (cox1)a | GenBank accession number | |
|---|---|---|---|---|---|---|
cox1 | GPI | |||||
T. cruzi | ||||||
 TCC 1994 | Myotis levis | SP/Brazil | Tcbat | hap9 | KT327226b | KT327312b |
 COLTRYP 038 | Rattus rattus | CE/Caatinga | TcI | hap3 | KU145414 | KT390200 |
 COLTRYP 039 | Rattus rattus | CE/Caatinga | TcI | hap3 | KU145415 | KT390201 |
 COLTRYP 048 | Didelphis albiventris | CE/Caatinga | TcI | hap3 | KU256221 | KU256227 |
 COLTRYP 087 | Didelphis albiventris | CE/Caatinga | TcI | hap3 | KU145426 | KT390212 |
 COLTRYP 128 | Didelphis albiventris | CE/Caatinga | TcI | hap3 | KU145433 | KT390219 |
 COLTRYP 018 | Thylamys macrurus | MS/Pantanal | TcI | hap1 | KU256219 | KU256225 |
 COLTRYP 084 | Oecomys sp. | MS/Pantanal | TcI | hap1 | KU145425 | KT390211 |
 COLTRYP 103 | Monodelphis domestica | MS/Pantanal | TcI | hap3 | KU145428 | KT390214 |
 COLTRYP 115 | Thylamys macrurus | MS/Pantanal | TcI | hap1 | KU145430 | KT390216 |
 COLTRYP 368 | Nasua nasua | MS/Pantanal | TcI | hap3 | KU145441 | KT390227 |
 COLTRYP 468 | Oecomys mamorae | MS/Pantanal | TcI | hap1 | KU145443 | KT390229 |
 COLTRYP 053 | Rhodnius pictipes | PA/Amazon | TcI | hap2 | KU145418 | KT390204 |
 COLTRYP 055 | Didelphis marsupialis | PA/Amazon | TcI | hap2 | KU145419 | KT390205 |
 COLTRYP 126 | Didelphis marsupialis | PA/Amazon | TcI | hap2 | KU145432 | KT390218 |
 COLTRYP 220 | Didelphis marsupialis | PA/Amazon | TcI | hap5 | KU145435 | KT390221 |
 COLTRYP 339 | Rhodnius pictipes | PA/Amazon | TcI | hap2 | KU145438 | KT390224 |
 Epinet 88,115 | Rhodnius robustus | PA/Amazon | TcI | hap3 | KU145452 | KT390238 |
 COLTRYP 356 | Akodon cursor | RJ/Atlantic Forest | TcI | hap3 | KU145439 | KT390225 |
 Epinet 88,127 | Rhodnius sp. | RJ/Atlantic Forest | TcI | hap4 | KU145454 | KT390240 |
 Epinet 88,132 | Philander frenatus | RJ/Atlantic Forest | TcI | hap4 | KU145456 | KT390242 |
 Epinet 88,135 | Philander frenatus | RJ/Atlantic Forest | TcI | hap4 | KU145457 | KT390243 |
 COLTRYP 003 | Didelphis aurita | SC/Atlantic Forest | TcI | hap1 | KU145410 | KT390196 |
 COLTRYP 036 | Didelphis albiventris | GO/Cerrado | TcI | hap8 | KU145413 | KT390199 |
 COLTRYP 042 | Desmodus rotundus | TO/Cerrado | TcI | hap4 | KU145416 | KT390202 |
 COLTRYP 136 | Phyllostomus albicola | TO/Cerrado | TcI | hap4 | KU145434 | KT390220 |
 COLTRYP 224 | Carollia perspicillata | TO/Cerrado | TcI | hap4 | KU145436 | KT390222 |
 COLTRYP 305 | Philander opossum | TO/Cerrado | TcI | hap6 | KU145437 | KT390223 |
 COLTRYP 362 | Gracilinanus sp. | TO/Cerrado | TcI | hap6 | KU145440 | KT390226 |
 Colombiana | Homo sapiens | Colombia | TcI | hap7 | KU168553 | KU168558 |
 Dm28c | Didelphis marsupialis | Venezuela | TcI | hap4 | KU168554 | KU168559 |
 Silvio | Homo sapiens | PA/Amazon | TcI | hap2 | FJ203996b |  |
 OPS21cl11 | Homo sapiens | Venezuela | TcI |  |  | AY484472b |
 COLTRYP 061 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145420 | KT390206 |
 COLTRYP 062 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145421 | KT390207 |
 COLTRYP 063 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145422 | KT390208 |
 COLTRYP 072 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145423 | KT390209 |
 COLTRYP 081 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145424 | KT390210 |
 COLTRYP 099 | Leontopithecus chrysomelas | BA/Atlantic Forest | TcII | hap11 | KU145427 | KT390213 |
 COLTRYP 006 | Thrichomys apereoides | PI/Caatinga | TcII | hap10 | KU256218 | KU256224 |
 COLTRYP 021 | Leontopithecus rosalia | RJ/Atlantic Forest | TcII | hap12 | KU145411 | KT390197 |
 COLTRYP 121 | Leontopithecus rosalia | RJ/Atlantic Forest | TcII | hap10 | KU145431 | KT390217 |
 Epinet 88,130 | Philander frenatus | RJ/Atlantic Forest | TcII | hap11 | KU145455 | KT390241 |
 COLTRYP 043 | Triatoma tibiamaculata | SC/Atlantic Forest | TcII | hap10 | KU145417 | KT390203 |
 Epinet 88,121 | Triatoma tibiamaculata | SC/Atlantic Forest | TcII | hap10 | KU145453 | KT390239 |
 Y | Homo sapiens | SP/Brazil | TcII | hap11 | KU168555 | KU168560 |
 Esmeraldo | Homo sapiens | BA/Brazil | TcII | hap11 | DQ343646b |  |
 Tu18cl2 | Triatoma infestans | Bolivia | TcII |  |  | AY484477b |
 COLTRYP 113 | Monodelphis domestica | GO/Cerrado | TcIII | hap14 | KU145429 | KT390215 |
 COLTRYP 370 | Rhodnius pictipes | PA/Amazon | TcIII | hap15 | KU145442 | KT390228 |
 COLTRYP 029 | Galictis vittata | RJ/Atlantic Forest | TcIII | hap13 | KU145412 | KT390198 |
 3663 | Panstrongylus geniculatus | AM/Brazil | TcIII | hap13 | KU168556 | KU168561 |
 M6241 cl6 | Homo sapiens | PA/Brazil | TcIII |  |  | AY484478b |
 COLTRYP 041 | Thrichomys pachyurus | MS/Pantanal | TcIV | hap16 | KU256220 | KU256226 |
 COLTRYP 471 | Oecomys mamorae | MS/Pantanal | TcIV | hap16 | KU145444 | KT390230 |
 COLTRYP 524 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145445 | KT390231 |
 COLTRYP 526 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145446 | KT390232 |
 COLTRYP 527 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145447 | KT390233 |
 COLTRYP 528 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145448 | KT390234 |
 COLTRYP 529 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145449 | KT390235 |
 COLTRYP 531 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145450 | KT390236 |
 COLTRYP 532 | Triatoma sp. | MS/Pantanal | TcIV | hap16 | KU145451 | KT390237 |
 4167 | Rhodnius brethesi | AM/Brazil | TcIV | hap16 | KU168557 | KU168562 |
 CANIIIcl1 | Homo sapiens | PA/Brazil | TcIV |  |  | AY484474b |
 Sc43cl1 | Triatoma infestans | Bolivia | TcV | hap17 | KU686477 | KU686481 |
 Bug2148 | Triatoma infestans | RS/Brazil | TcV | hap17 | KU686478 | KU686482 |
 CLBrener | Triatoma infestans | SP/Brazil | TcVI | hap17 | KU686479 | KU686483 |
 Tulacl2 | Homo sapiens | Chile | TcVI | hap17 | KU686480 | KU686484 |
 CLBrener | Triatoma infestans | SP/Brazil | TcVI | hap17 | DQ343645b |  |
 Bug2148_1 | Triatoma infestans | RS/Brazil | TcV |  |  | HQ452737b |
 Bug2148_2 | Triatoma infestans | RS/Brazil | TcV |  |  | HQ452738b |
 CLBrener_1 | Triatoma infestans | SP/Brazil | TcVI |  |  | HQ452739b |
 CLBrener_2 | Triatoma infestans | SP/Brazil | TcVI |  |  | HQ452740b |
T. c. marinkellei | ||||||
 COLTRYP 107 | Phyllostomus discolor | GO/Cerrado |  | hap18 | KU145458 | KT390244 |
 COLTRYP 117 | Phyllostomus discolor | GO/Cerrado |  | hap18 | KU256222 | KU256228 |
 COLTRYP 143 | Phyllostomus discolor | GO/Cerrado |  | hap18 | KU256223 | KU256229 |
 COLTRYP 576 | Phyllostomus hastatus | AC/Amazon |  | hap19 | KX620471 | KX620476 |
 COLTRYP 577 | Phyllostomus hastatus | AC/Amazon |  | hap19 | KX620472 | KX620477 |
 B7 | Phyllostomus discolor | BA/Brazil |  | hap18 | KC427240b | AY484485b |
 TCC 344 | Carollia perspicillata | RO/Brazil |  | hap19 | KT327227b | KT327313b |
T. dionisii | ||||||
 COLTRYP 596 | Anoura geoffroyi | ES/Atlantic Forest |  | hap21 | KX274234 | KX274236 |
 COLTRYP 598 | Carollia sp. | ES/Atlantic Forest |  | hap21 | KX274235 | KX274237 |
 COLTRYP 621 | Anoura geoffroyi | ES/Atlantic Forest |  | hap21 | KX620468 | KX620473 |
 COLTRYP 622 | Carollia sp. | ES/Atlantic Forest |  | hap21 | KX620469 | KX620474 |
 COLTRYP 623 | Carollia sp. | ES/Atlantic Forest |  | hap21 | KX620470 | KX620475 |
T. rangeli | ||||||
 R1625 | Homo sapiens | El Salvador |  | hap23 | KU176138 | KU176137 |
 RGB | Canis familiaris | Colombia |  |  |  | AY484486b |
 SC58 | Echimys dasythrix | SC/Brazil |  | hap24 | KJ803830b |  |