TY - JOUR AU - Smith, H. V. AU - Nichols, R. A. PY - 2010 DA - 2010// TI - Cryptosporidium: detection in water and food JO - Exp Parasitol VL - 124 UR - https://doi.org/10.1016/j.exppara.2009.05.014 DO - 10.1016/j.exppara.2009.05.014 ID - Smith2010 ER - TY - JOUR AU - Nolan, M. J. AU - Jex, A. R. AU - Koehler, A. V. AU - Haydon, S. R. AU - Stevens, M. A. AU - Gasser, R. B. PY - 2013 DA - 2013// TI - Molecular-based investigation of Cryptosporidium and Giardia from animals in water catchments in southeastern Australia JO - Water Res VL - 47 UR - https://doi.org/10.1016/j.watres.2012.12.027 DO - 10.1016/j.watres.2012.12.027 ID - Nolan2013 ER - TY - JOUR AU - Koehler, A. V. AU - Haydon, S. R. AU - Jex, A. R. AU - Gasser, R. B. PY - 2016 DA - 2016// TI - Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015) JO - Parasit Vectors VL - 9 UR - https://doi.org/10.1186/s13071-016-1607-1 DO - 10.1186/s13071-016-1607-1 ID - Koehler2016 ER - TY - JOUR AU - Zahedi, A. AU - Monis, P. AU - Aucote, S. AU - King, B. AU - Paparini, A. AU - Jian, F. PY - 2016 DA - 2016// TI - Zoonotic Cryptosporidium species in animals inhabiting Sydney water catchments JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0168169 DO - 10.1371/journal.pone.0168169 ID - Zahedi2016 ER - TY - JOUR AU - Zahedi, A. AU - Paparini, A. AU - Jian, F. AU - Robertson, I. AU - Ryan, U. PY - 2016 DA - 2016// TI - Public health significance of zoonotic Cryptosporidium species in wildlife: critical insights into better drinking water management JO - Int J Parasitol Parasites Wildl VL - 5 UR - https://doi.org/10.1016/j.ijppaw.2015.12.001 DO - 10.1016/j.ijppaw.2015.12.001 ID - Zahedi2016 ER - TY - JOUR AU - Xiao, L. AU - Fayer, R. AU - Ryan, U. M. AU - Upton, S. J. PY - 2004 DA - 2004// TI - Cryptosporidium taxonomy: recent advances and implications for public health JO - Clin Microbiol Rev VL - 17 UR - https://doi.org/10.1128/CMR.17.1.72-97.2004 DO - 10.1128/CMR.17.1.72-97.2004 ID - Xiao2004 ER - TY - JOUR AU - Ryan, U. AU - Fayer, R. AU - Xiao, L. PY - 2014 DA - 2014// TI - Cryptosporidium species in humans and animals: current understanding and research needs JO - Parasitology VL - 141 UR - https://doi.org/10.1017/S0031182014001085 DO - 10.1017/S0031182014001085 ID - Ryan2014 ER - TY - JOUR AU - Xiao, L. AU - Morgan, U. M. AU - Limor, J. AU - Escalante, A. AU - Arrowood, M. AU - Shulaw, W. PY - 1999 DA - 1999// TI - Genetic diversity within Cryptosporidium parvum and related Cryptosporidium species JO - Appl Environ Microbiol VL - 65 ID - Xiao1999 ER - TY - JOUR AU - Jex, A. R. AU - Smith, H. V. AU - Monis, P. T. AU - Campbell, B. E. AU - Gasser, R. B. PY - 2008 DA - 2008// TI - Cryptosporidium - biotechnological advances in the detection, diagnosis and analysis of genetic variation JO - Biotechnol Adv VL - 26 UR - https://doi.org/10.1016/j.biotechadv.2008.02.003 DO - 10.1016/j.biotechadv.2008.02.003 ID - Jex2008 ER - TY - JOUR AU - Le Blancq, S. M. AU - Khramtsov, N. V. AU - Zamani, F. AU - Upton, S. J. AU - Ribosomal, W. T. W. PY - 1997 DA - 1997// TI - RNA gene organization in Cryptosporidium parvum JO - Mol Biochem Parasitol VL - 90 UR - https://doi.org/10.1016/S0166-6851(97)00181-3 DO - 10.1016/S0166-6851(97)00181-3 ID - Le Blancq1997 ER - TY - JOUR AU - Ryan, U. M. AU - Xiao, L. AU - Read, C. AU - Zhou, L. AU - Lal, A. A. AU - Pavlasek, I. PY - 2003 DA - 2003// TI - Identification of novel Cryptosporidium genotypes from the Czech Republic JO - Appl Environ Microbiol VL - 69 UR - https://doi.org/10.1128/AEM.69.7.4302-4307.2003 DO - 10.1128/AEM.69.7.4302-4307.2003 ID - Ryan2003 ER - TY - JOUR AU - Nolan, M. J. AU - Jex, A. R. AU - Haydon, S. R. AU - Stevens, M. A. AU - Gasser, R. B. PY - 2010 DA - 2010// TI - Molecular detection of Cryptosporidium cuniculus in rabbits in Australia JO - Infect Genet Evol VL - 10 UR - https://doi.org/10.1016/j.meegid.2010.07.020 DO - 10.1016/j.meegid.2010.07.020 ID - Nolan2010 ER - TY - JOUR AU - Xiao, L. PY - 2010 DA - 2010// TI - Molecular epidemiology of cryptosporidiosis: an update JO - Exp Parasitol VL - 124 UR - https://doi.org/10.1016/j.exppara.2009.03.018 DO - 10.1016/j.exppara.2009.03.018 ID - Xiao2010 ER - TY - STD TI - Ryan U, Paparini A, Tong K, Yang R, Gibson-Kueh S, O'Hara A, Lymbery A, Xiao L. Cryptosporidium huwi n. sp. (Apicomplexa: Eimeriidae) from the guppy (Poecilia reticulata). Exp Parasitol. 2015;150:31–5. ID - ref14 ER - TY - JOUR AU - Holubova, N. AU - Sak, B. AU - Horcickova, M. AU - Hlásková, L. AU - Kvetonova, D. AU - Menchaca, S. PY - 2016 DA - 2016// TI - Cryptosporidium avium n. sp. (Apicomplexa: Cryptosporidiidae) in birds JO - Parasitol Res VL - 115 UR - https://doi.org/10.1007/s00436-016-4967-8 DO - 10.1007/s00436-016-4967-8 ID - Holubova2016 ER - TY - STD TI - Ježková J, Horcickova M, Hlásková L, Sak B, Kvetonova D, Novak J, et al. Cryptosporidium testudinis sp. n., Cryptosporidium ducismarci Traversa, 2010 and Cryptosporidium tortoise genotype III (Apicomplexa: Cryptosporidiidae) in tortoises. Folia Parasitol (Praha). 2016;63:1–10. ID - ref16 ER - TY - STD TI - Kváč M, Havrdová N, Hlásková L, Daňková T, Kanděra J, Ježková J, et al. Cryptosporidium proliferans n. sp.(Apicomplexa: Cryptosporidiidae): molecular and biological evidence of cryptic species within gastric Cryptosporidium of mammals. PLoS One. 2016;11(1):e0147090. ID - ref17 ER - TY - JOUR AU - Silva, S. O. AU - Richtzenhain, L. J. AU - Barros, I. N. AU - Gomes, A. M. AU - Silva, A. V. AU - Kozerski, N. D. PY - 2013 DA - 2013// TI - A new set of primers directed to 18S rRNA gene for molecular identification of Cryptosporidium spp. and their performance in the detection and differentiation of oocysts shed by synanthropic rodents JO - Exp Parasitol VL - 135 UR - https://doi.org/10.1016/j.exppara.2013.09.003 DO - 10.1016/j.exppara.2013.09.003 ID - Silva2013 ER - TY - JOUR AU - Mikhailov, K. V. AU - Tikhonenkov, D. V. AU - Janouskovec, J. AU - Diakin, A. Y. AU - Ofitserov, M. V. AU - Mylnikov, A. P. AU - Aleshin, V. V. PY - 2015 DA - 2015// TI - Primary structure of 28S rRNA gene confirms monophyly of free-living heterotrophic and phototrophic apicomplexans (Alveolata) JO - Biochem Mosc VL - 80 UR - https://doi.org/10.1134/S0006297915110115 DO - 10.1134/S0006297915110115 ID - Mikhailov2015 ER - TY - JOUR AU - Heiges, M. AU - Wang, H. AU - Robinson, E. AU - Aurrecoechea, C. AU - Gao, X. AU - Kaluskar, N. PY - 2006 DA - 2006// TI - CryptoDB: a Cryptosporidium bioinformatics resource update JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj078 DO - 10.1093/nar/gkj078 ID - Heiges2006 ER - TY - JOUR AU - Koehler, A. V. AU - Bradbury, R. S. AU - Stevens, M. A. AU - Haydon, S. R. AU - Jex, A. R. AU - Gasser, R. B. PY - 2013 DA - 2013// TI - Genetic characterization of selected parasites from people with histories of gastrointestinal disorders using a mutation scanning-coupled approach JO - Electrophoresis VL - 34 UR - https://doi.org/10.1002/elps.201300100 DO - 10.1002/elps.201300100 ID - Koehler2013 ER - TY - JOUR AU - Koehler, A. V. AU - Whipp, M. AU - Hogg, G. AU - Haydon, S. R. AU - Stevens, M. A. AU - Jex, A. R. AU - Gasser, R. B. PY - 2014 DA - 2014// TI - First genetic analysis of Cryptosporidium from humans from Tasmania, and identification of a new genotype from a traveller to Bali JO - Electrophoresis VL - 35 UR - https://doi.org/10.1002/elps.201400225 DO - 10.1002/elps.201400225 ID - Koehler2014 ER - TY - JOUR AU - Ebner, J. AU - Koehler, A. V. AU - Robertson, G. AU - Bradbury, R. S. AU - Jex, A. R. AU - Haydon, S. R. PY - 2015 DA - 2015// TI - Genetic analysis of Giardia and Cryptosporidium from people in northern Australia using PCR-based tools JO - Infect Genet Evol VL - 36 UR - https://doi.org/10.1016/j.meegid.2015.08.034 DO - 10.1016/j.meegid.2015.08.034 ID - Ebner2015 ER - TY - BOOK AU - Triggs, B. PY - 2004 DA - 2004// TI - Tracks, scats and other traces: a field guide to Australian mammals PB - Oxford University Press CY - South Melbourne ID - Triggs2004 ER - TY - JOUR AU - Dalén, L. AU - Götherström, A. AU - Angerbjörn, A. PY - 2004 DA - 2004// TI - Identifying species from pieces of faeces JO - Conserv Genet VL - 5 UR - https://doi.org/10.1023/B:COGE.0000014060.54070.45 DO - 10.1023/B:COGE.0000014060.54070.45 ID - Dalén2004 ER - TY - JOUR AU - Roeber, F. AU - Jex, A. R. AU - Gasser, R. B. PY - 2013 DA - 2013// TI - Comparative evaluation of two DNA isolation techniques for PCR-based diagnosis of gastrointestinal nematode infections in sheep JO - Mol Cell Probes VL - 27 UR - https://doi.org/10.1016/j.mcp.2013.03.002 DO - 10.1016/j.mcp.2013.03.002 ID - Roeber2013 ER - TY - JOUR AU - Kearse, M. AU - Moir, R. AU - Wilson, A. AU - Stones-Havas, S. AU - Cheung, M. AU - Sturrock, S. PY - 2012 DA - 2012// TI - Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts199 DO - 10.1093/bioinformatics/bts199 ID - Kearse2012 ER - TY - JOUR AU - Zhu, G. AU - Keithly, J. S. AU - Philippe, H. PY - 2000 DA - 2000// TI - What is the phylogenetic position of Cryptosporiidum? JO - Int J Syst Evol Microbiol VL - 50 UR - https://doi.org/10.1099/00207713-50-4-1673 DO - 10.1099/00207713-50-4-1673 ID - Zhu2000 ER - TY - JOUR AU - Jurka, J. AU - Kapitonov, V. V. AU - Pavlicek, A. AU - Klonowski, P. AU - Kohany, O. AU - Walichiewicz, J. PY - 2005 DA - 2005// TI - Repbase update, a database of eukaryotic repetitive elements JO - Cytogenet Genome Res VL - 110 UR - https://doi.org/10.1159/000084979 DO - 10.1159/000084979 ID - Jurka2005 ER - TY - STD TI - Smit AFA, Hubley R, Green P. RepeatMasker. Version open-3.3.0. 1996–2010. http://www.repeatmasker.org. Accessed 20 Feb 2016. UR - http://www.repeatmasker.org ID - ref30 ER - TY - STD TI - Maddison WP, Maddison DR. Mesquite. A modular system for evolutionary analysis. Version 3.04. 2015. http://mesquiteproject.org. Accessed 20 Feb 2016. UR - http://mesquiteproject.org ID - ref31 ER - TY - JOUR AU - Ki, J. S. AU - Han, M. S. PY - 2007 DA - 2007// TI - Informative characteristics of 12 divergent domains in complete large subunit rDNA sequences from the harmful dinoflagellate genus, Alexandrium (Dinophyceae) JO - J Eukaryot Microbiol VL - 54 UR - https://doi.org/10.1111/j.1550-7408.2007.00251.x DO - 10.1111/j.1550-7408.2007.00251.x ID - Ki2007 ER - TY - JOUR AU - Untergasser, A. AU - Cutcutache, I. AU - Koressaar, T. AU - Ye, J. AU - Faircloth, B. C. AU - Remm, M. AU - Rozen, S. G. PY - 2012 DA - 2012// TI - Primer3 new capabilities and interfaces JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks596 DO - 10.1093/nar/gks596 ID - Untergasser2012 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. AU - Miyata, T. M. A. F. F. T. PY - 2002 DA - 2002// TI - A novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf436 DO - 10.1093/nar/gkf436 ID - Katoh2002 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Ronquist, F. M. R. B. A. Y. E. S. PY - 2001 DA - 2001// TI - Bayesian inference of phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.8.754 DO - 10.1093/bioinformatics/17.8.754 ID - Huelsenbeck2001 ER - TY - JOUR AU - Darriba, D. AU - Taboada, G. L. AU - Doallo, R. AU - Posada, D. PY - 2012 DA - 2012// TI - jModelTest 2: more models, new heuristics and parallel computing JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2109 DO - 10.1038/nmeth.2109 ID - Darriba2012 ER - TY - BOOK AU - Hillis, D. M. AU - Moritz, C. AU - Mable, B. K. PY - 1996 DA - 1996// TI - Molecular systematics PB - Sinauer Associates CY - Sunderland, Massachusetts ID - Hillis1996 ER - TY - JOUR AU - Koehler, A. V. AU - Haydon, S. R. AU - Jex, A. R. AU - Gasser, R. B. I. PY - 2016 DA - 2016// TI - Cryptosporidium from the common wombat (Vombatus ursinus) a new species and distinct from Cryptosporidium ubiquitum? JO - Infect Genet Evol VL - 44 UR - https://doi.org/10.1016/j.meegid.2016.06.028 DO - 10.1016/j.meegid.2016.06.028 ID - Koehler2016 ER - TY - JOUR AU - Šlapeta, J. PY - 2017 DA - 2017// TI - Cryptosporidium: identification and genetic typing JO - Curr Protoc Microbiol VL - 44 UR - https://doi.org/10.1002/cpmc.24 DO - 10.1002/cpmc.24 ID - Šlapeta2017 ER -