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Table 4 Nucleotide differences of Anaplasma phagocytophilum in the amplified partial genes

From: Epidemiology, genetic variants and clinical course of natural infections with Anaplasma phagocytophilum in a dairy cattle herd

Gene

Variante

Host (n)

Nucleotide position

 
   

76

80

84

175

237

        

16S rRNA a

16S-7 (I)

tick (1)

G

A

A

A

G

        

(497 bp)

16S-19 (V)-like

roe deer (1)

A

G

A

C

A

        
 

16S-20 (W)

cow (20), ticks (3)

A

A

A

C

G

        
 

16S-21 (X)

roe deer (2)

G

A

A

C

G

        
 

16S-22 (Y)

cow (1), ticks (1)

G

A

G

C

G

        
   

780

840

           

groEL b

g-15 (N)

cow (3)

A

T

           

(530 bp)

g-18 (X)

cow (10)

G

C

           
   

249

265

291

          

msp2 c

m2-9 (J)

roe deer (1)

T

C

T

further 45 nucleotide differences to m2-26 and m2-27

(893 bp)

m2-26

cow (9)

T

A

A

          
 

m2-27

cow (2)

A

C

G

          
   

375

390

405

411

427

450

462

510

516

603

612

672

678

msp4 d

m4-13 (n)

cow (1), tick (1)

G

G

T

G

A

T

T

C

C

T

C

A

C

(343 bp)

m4-49

cow (12), tick (1)

T

A

C

A

G

T

C

C

T

C

T

A

C

 

m4-50

cow (3)

T

A

C

A

G

C

C

T

C

C

T

G

T

 

m4-51

cow (5), tick (2)

C

G

T

G

A

T

T

C

T

C

T

A

C

  1. Note: Anaplasma phagocytophilum HZ complete genome (NC_007797) was used as reference strain analogous to Silaghi et al. [23]
  2. Nucleotide positions indicate the relative position to the genes:
  3. a1433 bp of rrsA 16S ribosomal RNA (Gene ID: 3930754)
  4. b1653 bp of groEL chaperonin groEL (Gene ID: 3930333)
  5. c1098 bp of APH_1361 major surface protein 2 (Gene ID: 3930710)
  6. d849 bp of msp4 major surface protein 4 (Gene ID: 3930710)
  7. eNot official nomenclature; letters in parentheses are based on nomenclature in other publications [17, 23, 25]