Table 4 Genotypes of Enterocytozoon bieneusi characterised by nested PCR-based sequencing of the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA from 25 individual faecal samples from sambar deer collected (in different seasons and years) from five of Melbourne’s water catchment areas
Genotype designationa | GenBank ID | Sample code | Catchment area | Season | Year |
|---|---|---|---|---|---|
D | MF693831 | C1508 | Cardinia | Spring | 2010 |
D | MF693831 | UY1357 | Upper Yarra | Winter | 2010 |
D | MF693831 | YY4416 | Yan Yean | Autumn | 2014 |
J | MF693833 | OS5279 | O’Shannassay | Spring | 2014 |
Type IV | MF693832 | OS1917 | O’Shannassay | Winter | 2011 |
MWC_d1 * | MF496204 | C1505 | Cardinia | Spring | 2010 |
MWC_d1 * | MF496204 | C4255 | Cardinia | Summer | 2014 |
MWC_d1 * | MF496204 | C3645 | Cardinia | Winter | 2013 |
MWC_d1 * | MF496204 | C4857 | Cardinia | Winter | 2014 |
MWC_d1 * | MF496204 | MR7507 | Maroondah | Autumn | 2017 |
MWC_d1 * | MF496204 | MR240 | Maroondah | Winter | 2009 |
MWC_d1 * | MF496204 | OS4550 | O’Shannassay | Autumn | 2014 |
MWC_d1 * | MF496204 | OS7320 | O’Shannassay | Spring | 2016 |
MWC_d1 * | MF496204 | UY4661 | Upper Yarra | Autumn | 2014 |
MWC_d1 * | MF496204 | UY4607 | Upper Yarra | Autumn | 2014 |
MWC_d1 * | MF496204 | UY4646 | Upper Yarra | Autumn | 2014 |
MWC_d1 * | MF496204 | UY4614 | Upper Yarra | Autumn | 2014 |
MWC_d1 * | MF496204 | UY4624 | Upper Yarra | Autumn | 2014 |
MWC_d1 * | MF496204 | UY4067 | Upper Yarra | Spring | 2013 |
MWC_d1 * | MF496204 | UY6189 | Upper Yarra | Spring | 2015 |
MWC_d1 * | MF496204 | UY6181 | Upper Yarra | Spring | 2015 |
MWC_d1 * | MF496204 | UY6540 | Upper Yarra | Summer | 2016 |
MWC_d1 * | MF496204 | UY2942 | Upper Yarra | Winter | 2012 |
MWC_d1 * | MF496204 | UY6973 | Upper Yarra | Winter | 2016 |
MWC_d2 * | MF496203 | C3263 | Cardinia | Spring | 2012 |